Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000876485.1_202015-02-17] 909 sequences; 42,540,497 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13 161 2e-34 seq224 147 5e-30 seq601 136 1e-26 >seq13 Length=660952 Score = 161 bits (178), Expect = 2e-34 Identities = 167/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| |||||||| ||||| || |||||||| ||||| ||| | ||| Sbjct 443214 CAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGTGAC 443155 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || || |||||||| ||||| Sbjct 443154 ACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAG 443095 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || ||||||||||| || || ||||| |||||||| | || |||| ||| || ||| | Sbjct 443094 CGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCAC-CTTGAGCGACTACAACAT 443036 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || ||||| || || || ||| | |||| Sbjct 443035 CCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 443000 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||| ||||| || || || || |||| Sbjct 443663 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACTATCG 443604 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||||| || || |||||||| |||||||| || || | Sbjct 443603 ACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGA 443544 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || ||||| || || ||||| || | || |||||||| || ||| | ||||| | Sbjct 443543 TCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGG 443484 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || ||||| || Sbjct 443483 AATCTACTCTTCATCTCGT 443465 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || || ||||||||||| || || ||| Sbjct 443952 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCCGAC 443893 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 443892 ACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAA 443833 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || || || | ||||| | ||||| ||| | Sbjct 443832 CGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAACATT 443773 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||||||| Sbjct 443772 CAGAAGGAGTCCACTCTTCATCTTGTT 443746 >seq224 Length=426345 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 275264 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 275205 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 275204 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 275145 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 275144 CGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 275085 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 275084 CAGAAGGAGTCCACCCTCCACCTGGT 275059 >seq601 Length=214759 Score = 136 bits (150), Expect = 1e-26 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || ||||| |||||||| || ||| |||||||| Sbjct 52174 TTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCGGACACCAT 52233 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||||| Sbjct 52234 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACT 52293 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || ||||| | ||||| |||| || ||| |||| || Sbjct 52294 GATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 52353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717180669346