Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1098 331 1e-85 seq4643 149 6e-31 seq4729 141 1e-28 seq1492 132 5e-26 >seq1098 Length=11580 Score = 331 bits (366), Expect = 1e-85 Identities = 564/805 (70%), Gaps = 17/805 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || || Sbjct 9462 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 9521 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||| | | |||||| ||| || Sbjct 9522 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGACGAGCAGTTCTTCGTCTC 9580 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| ||||| ||| |||||||||||||||||||| || |||||||| Sbjct 9581 CCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGAGCG 9640 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 9641 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 9700 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || ||| |||||| ||||| ||| | | || || Sbjct 9701 GGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGAGC-CTG 9759 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | || |||||||| ||||| || || ||| || |||||| Sbjct 9760 CTCA-ACGAACCTAC--CTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGAAGG 9816 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTG 117046 |||| ||||| | || |||||| | || ||| || |||| | |||| || || Sbjct 9817 CCGACTGGGCCATCCGATGGATC-CAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTC 9875 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| || ||||||||||| ||||||| || || ||| |||| || |||||| Sbjct 9876 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTC 9935 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || ||||||||||| |||||||| || ||||||||||||||| | |||||| Sbjct 9936 AAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 9995 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 ||||| || ||||||||| || | || | || | | || | ||| | Sbjct 9996 GGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCACCTCAAGGGCCGTGCCAGCAAG 10055 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | || ||| ||| ||||||| || ||| |||| |||||| ||||| ||||| Sbjct 10056 CAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACCGAG 10115 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345 || || || |||| ||||| || | || ||| ||| ||| ||||||||||| Sbjct 10116 GCCCT-CCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTT 10174 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 |||||||||| | || || ||| || | | || ||| |||||| | ||||||| Sbjct 10175 CGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGGCCACCAACCC 10234 Query 117406 GCTGGACTTTATGAACCTCATCTCC 117430 | ||||| ||| | ||||||| Sbjct 10235 CTTCGACTTCATGGAGAACATCTCC 10259 >seq4643 Length=2915 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || || |||||| |||| || || | Sbjct 671 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 730 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 731 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 789 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 790 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 849 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || || | ||| || | || || Sbjct 850 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGG 900 >seq4729 Length=2784 Score = 141 bits (156), Expect = 1e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 199 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 258 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| |||||||||| ||||| Sbjct 259 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 318 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| |||||||| || | || ||||| ||||||||||||||||||| Sbjct 319 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 378 Query 40879 G 40879 | Sbjct 379 G 379 >seq1492 Length=9010 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || |||||||| | || || || | | | Sbjct 5055 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCGAGC 5114 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| |||||||||||| | ||||| Sbjct 5115 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 5173 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || |||||||| |||| |||||||| ||||||||| Sbjct 5174 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAA 5233 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 5234 CATCCAGAAGGAGTCGACCCTTCATCTTGT 5263 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 |||||||| ||||| ||| |||| ||||| || | || | | | | | ||||| Sbjct 4348 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 4407 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||||||| | |||||||| || || || | ||| ||||| Sbjct 4408 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 4467 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||||||| ||| |||||||||||||||||| | || || || Sbjct 4468 CAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCAC 4527 Query 40894 CTAGT 40898 || || Sbjct 4528 CTCGT 4532 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| | || Sbjct 4827 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAATCGTCC 4886 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || || || | ||||| || ||||| || | || || Sbjct 4887 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 4946 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || ||||| ||||| || |||| || || |||| |||||||||| Sbjct 4947 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 5006 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 5007 ATCCAGAAGGAGTCGACTCTGCACCTGGT 5035 Score = 102 bits (112), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || ||||| || || || |||||| |||| || || | |||||| Sbjct 4606 TAGTCGTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGA 4665 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | || || ||||| || || | |||||||| || Sbjct 4666 TCGACAACG-TCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGC 4724 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || || | ||| ||||| ||||| || || | ||||||||| |||||||||||| ||| Sbjct 4725 CTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAG 4784 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 |||||| | || || || || || Sbjct 4785 AAGGAGTCAACACTCCACCTCGT 4807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515098819033920