Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1098 143 3e-29
>seq1098
Length=11580
Score = 143 bits (158), Expect = 3e-29
Identities = 370/558 (66%), Gaps = 8/558 (1%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
||||| || ||| ||| ||||||||||| | | || | ||||| ||||| || ||
Sbjct 10018 CATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGG 9959
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| ||||||||||| || ||||| || ||||| || || | ||| ||||||
Sbjct 9958 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 9899
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGC-TGTCATGT 33758
|| || || || ||||||||||| | || | || || | || | | |||| ||
Sbjct 9898 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGG 9839
Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| | || ||||| ||||||||||| | || || || || || ||||| ||
Sbjct 9838 ATCCATCGGATG-GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTT 9780
Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877
||||| ||| || || | | || || | || || || || | || || |
Sbjct 9779 GAAGAGGTAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGT 9720
Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937
|| || || ||||| || || ||||| || |||||||| |||| ||||||| ||
Sbjct 9719 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGAT 9660
Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997
||| || || | ||||| || | | || || || || || || ||| ||| ||
Sbjct 9659 CTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGC 9600
Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054
|| || || | | || | || | | ||||| | || | | || |||||
Sbjct 9599 GAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCA 9540
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114
|| | || ||| || |||| ||| | || || | ||||| || || ||||| |||||
Sbjct 9539 GTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTT 9480
Query 34115 TTTATACATATTCCAGAT 34132
|| ||||| | ||||||
Sbjct 9479 CTTGTACATCTGCCAGAT 9462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629670443117760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |