Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq5525 104 4e-18
seq3977 98.7 2e-16
>seq5525
Length=1932
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| | | ||||| |||||||| || ||||||||||| |||||
Sbjct 1575 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 1517
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| ||||||||||| || ||||||||| ||||||
Sbjct 1516 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 1476
Score = 84.2 bits (92), Expect = 3e-12
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| | |||| ||||||| || || |||| ||| |
Sbjct 1420 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 1361
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| |||||||| | || | ||||| |
Sbjct 1360 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTGGTCTACG 1301
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||| | | || ||||| || |||||
Sbjct 1300 CCCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1257
>seq3977
Length=3725
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||| ||| || || |||||||| || ||||||||||| || ||
Sbjct 1382 GCCAAGCGCCACCGCAAGAT-TCTACGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 1440
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||| ||||| ||||||||| ||||||
Sbjct 1441 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATCTCTG 1481
Score = 84.2 bits (92), Expect = 3e-12
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | |||| | |||| ||||||| || ||| || | ||| |
Sbjct 1539 TGATCTACGAGGAGACCCGGGGTGTTCTCAAGACCTTCCTCGAGGGCGTCATTCGTGACG 1598
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| ||||| || | || ||||||| |
Sbjct 1599 CCGTCACCTACACCGAGCACGCCAAGCGAAAGACCGTCACATCGCTCGACGTCGTCTACG 1658
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || |||||||| | | || ||||| || |||||
Sbjct 1659 CCCTCAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79058109773556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |