Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1098 118 1e-21 >seq1098 Length=11580 Score = 118 bits (130), Expect = 1e-21 Identities = 365/561 (65%), Gaps = 9/561 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | ||| ||| || || | Sbjct 10019 GCATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAG 9960 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || || ||||| ||| || || Sbjct 9959 GCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAA 9900 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-- 93268 ||||| || ||||| ||||| || || | ||| | ||||| | || || || Sbjct 9899 GATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAA---GGACGAGTTCTTGTC 9843 Query 93269 CT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || ||||||| | ||||| ||||| || || || || || | || || || || Sbjct 9842 CTGGATCCATCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGC 9783 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 ||| || ||||| ||| | | | || ||||| || || || | || || || Sbjct 9782 GTTGAAGAGGTAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTA 9723 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | || || |||| |||||||| || ||||| |||||||| |||| || || | Sbjct 9722 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGG 9663 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 |||||| || || |||| ||| || || || || ||||| || || || || || Sbjct 9662 GATCTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGC 9603 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATC 93564 || || || || | || || | || | ||| || | | | | || | Sbjct 9602 AGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTT 9543 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| ||| ||||| || || ||||| | || ||| ||||||| || || || || || Sbjct 9542 CCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGC 9483 Query 93625 TTTTTTGTACATATCCCATAT 93645 || |||||||| | ||| || Sbjct 9482 CTTCTTGTACATCTGCCAGAT 9462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556730689474080