Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq398 504 1e-137 seq1098 399 4e-106 >seq398 Length=19136 Score = 504 bits (558), Expect = 1e-137 Identities = 1246/1870 (67%), Gaps = 53/1870 (3%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| ||| || |||| |||| || | ||||||||||||||| ||||| Sbjct 15440 ACGGTGAACTGGATGGGAGCAGCGGCAGCCTGCGTTCGCAGGTAGTACATGCCCGTCTTC 15381 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| || | ||||||| || | ||| ||| || | Sbjct 15380 AGGCCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGG------- 15328 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||||||||||||| ||| || | ||||| | || || Sbjct 15327 --GTCCTT---CATGTGGATGTTGAGGGACTGGGACTGATCAATGAAGGCACCTCGGTCG 15273 Query 243917 GCGGCCATGGTGATGAGGTCCTT---CTGAGATATCTCATACGCCGTCTTGTAGATGGGC 243973 || ||||| ||| | | ||| ||| || ||||| | | |||||||||| || | Sbjct 15272 GCAGCCATC-TGA--ACGACCTGGCGCTGCGAAATCTCCCAGACGGTCTTGTAGAGGGCC 15216 Query 243974 TTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGG 244033 |||| | |||||| ||||||||| | || || || | | | |||| || Sbjct 15215 TTGACCTCGGCGGGGATGTTGGGGATGTTCTGGATGGAACCGTTCTCGGCAATGATTCGG 15156 Query 244034 GTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC 244093 | |||| ||| ||||||||||| | | || ||| || ||| ||| Sbjct 15155 TTTTTCATGGCATCCGACCACAGGCCCATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTG 15096 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || ||||| ||||| || | || || ||||||||||||| |||| | || |||||| Sbjct 15095 ACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCG 15036 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| |||||||||| ||||||| || || ||||| ||||| || | | |||| Sbjct 15035 AAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGC 14976 Query 244214 AGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATG 244273 |||||||| | | ||||||| || || | | ||| | | ||||||||| | | Sbjct 14975 AGACTGTTGCGAATGCCGTGCTCCTTGACCTGCTCCCGGAGGTTCTCCCAGTCCCAGAGG 14916 Query 244274 CCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG 244333 | || ||| | || | || ||||||||| ||||| || | |||| | || Sbjct 14915 TCAGA-AGG-CTTCACATT-------CCACATGTCGAACTGGAGAATACCCTCAGAGGCG 14865 Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTC 244392 || ||||| | |||| | ||||||||| || || |||||||| || | || Sbjct 14864 GGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACCGAAGCAGT- 14806 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA 244452 |||||| || | ||||||||||||||||||| |||||| | || || |||| | | Sbjct 14805 GAGGGCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGAGA 14746 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 ||| || |||| || | ||| | || || || ||||| || || | || || Sbjct 14745 CTCGAAAGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCAAT 14686 Query 244513 GGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 ||||| ||||||| ||||| | ||||| | || ||||| ||| ||||||| Sbjct 14685 GGGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCCGTAACAGGGTAGTGGTTCACGTCGAT 14626 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | | |||| |||||||| || | | ||||||| || | ||| ||||| || Sbjct 14625 AATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACTTCTGGAAGTCATA 14566 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 | | | ||| ||| | || ||| || || | ||||| | || || Sbjct 14565 ---GCAAGCATCATCGTAGTTGATGA-----ACGAAGGC----AGGGCCAGAGAAGCAAG 14518 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 ||||||||| || ||||| || | | | ||||| || ||||||||||||||| || Sbjct 14517 GTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGAGATTGGA 14458 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || |||||||||||||| || || ||| |||| ||||||| |||||||||||| Sbjct 14457 GCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAG 14398 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 ||||||||| ||||||||| ||| || |||||| | | |||||| | | || Sbjct 14397 CATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCTGGGC 14338 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932 ||| | ||| ||||| |||||||| | ||| || ||| || ||||||||||| Sbjct 14337 CTTCATGGTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAGAGCCTCGAACTC 14278 Query 244933 GGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGC 244991 ||| || ||| | || ||||||||| || ||| |||||||| |||| || | Sbjct 14277 CTCGCCATAGCAGTCGGCCAGACCGGGGCACT-CGTTGGGACACATGAGGGTCCAGTCAC 14219 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 || | || ||| | || ||||||||| ||||| |||||||| ||| |||| ||||| | Sbjct 14218 CGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGC 14159 Query 245052 TGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGA 245111 || | ||| ||| ||| |||||| | ||| || | || |||||||| || Sbjct 14158 GGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTG 14099 Query 245112 CGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCA 245171 ||||||||||||| | ||||| || | ||| || || ||||||||||| |||||||| | Sbjct 14098 CGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGA 14039 Query 245172 CCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 | || | || | |||||||| || || | || | ||||| ||| ||| Sbjct 14038 CGTACCGGGC-AGTGTTGTTGAAGACACGAAGCATGGGAGTGACACCGTTGGAGGTACCG 13980 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 ||||| || |||||| | ||| || | | || | || | || ||| | || Sbjct 13979 TTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCCGATACCA 13920 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 || || ||||||||| | ||| ||| |||||| || || || ||||| |||||| Sbjct 13919 CCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTG 13860 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 ||| ||||| | || ||| ||||| ||||||||||| |||| ||| | | | ||| Sbjct 13859 TCCTCTTTCATATCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTG 13800 Query 245411 AACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGC 245470 || || |||||| ||| ||||| ||| | |||||| | || ||| |||| || Sbjct 13799 AAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGG 13740 Query 245471 AGAGCGTCGATGTTGTCGCCGTGGAT-CTGCAGGGCGCACCTCATGAGGGTGTGCTGGGG 245529 | | || || | ||| || ||| | | | | || | ||||| |||||||||| Sbjct 13739 ACACGCTCAATATCGTCACCCCAGATGCCGACAGACACA-CGCATGATCATGTGCTGGGG 13681 Query 245530 -CG-TC-TCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAA 245586 || || | || || || |||||| | |||||| ||||| || |||||||| Sbjct 13680 ACGCTCAACAATCTTGCCATC---AATCTTGAGGAGGTAGGATCGCTCAAGAGTCTTGAA 13624 Query 245587 CCCAAAGTAC 245596 ||||||||| Sbjct 13623 GCCAAAGTAC 13614 >seq1098 Length=11580 Score = 399 bits (442), Expect = 4e-106 Identities = 615/860 (72%), Gaps = 28/860 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| || Sbjct 9462 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 9521 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 ||||||| || |||| | || ||| ||| |||| |||| ||| || Sbjct 9522 TCCAAGGATCTCCACGACTGGAA--CAACCGCCTGACTGCCGACGAGCAGTTCTTCGTCT 9579 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| || ||||||||||| |||||||||||||| ||||| |||||||| | | Sbjct 9580 CCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGAGC 9639 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| ||||| ||| | ||||| || |||||||||||||||||||| | Sbjct 9640 GATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGA 9699 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATC 42591 | |||||| | ||||| ||| ||| | || |||| |||| |||||| ||| | Sbjct 9700 TGGAGAACATCCACTCCGAGACCTACTC---GCTCCTCATTGACACCTACATCAAGGAGC 9756 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 | | | || | | || ||||| ||||| ||||| || ||||||||| ||||||| Sbjct 9757 CTGCTCAACGAACCTACCTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGAAGG 9816 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTA 42710 | |||||||| || |||||| || | | | || | | || | || | || || Sbjct 9817 CCGACTGGGCCATCCGATGGATCCAG-GACAAGAACTCGTCCTTTGCTCAGCGTCTCGTC 9875 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 |||||| | ||||||||||| ||||||||| || ||||| |||||||||||||||||| Sbjct 9876 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTC 9935 Query 42771 AAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| || || || ||||| || || ||||| || ||||| |||||| | ||||| Sbjct 9936 AAGAAGCGTGGCCTC-ATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGA 9994 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCT 42888 ||| || || | |||||||| |||||||| ||| ||||||| ||| | ||| Sbjct 9995 GGGTCTTCACACCGACTTTGCATGCCTCCTCCACTC---CCACCTCAAGGGCCGTGCCAG 10051 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | ||| || ||| || ||||||||| || ||||| || ||| |||||||||| | Sbjct 10052 C-AAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGA 10110 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | || | || ||| ||||| ||||||||||| |||||||||| |||||||| Sbjct 10111 CCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCG 10170 Query 43009 AGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACGC 43065 ||| ||||||||||| ||||| || ||| | || | || | ||||||| | Sbjct 10171 AGTTCGTCGCCGACCGCCTCCTCGTCGCC--CTCGGCAACGAGAAG-GTCTACAAGGCCA 10227 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | |||||||||||| |||||||||||||| | | |||||||||||||| ||||||| Sbjct 10228 CCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGA 10287 Query 43126 AGCGCGTCGCCGACTACCAG 43145 |||| |||| ||||||||| Sbjct 10288 AGCGTGTCGGTGACTACCAG 10307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944118555145920