Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1492 125 7e-24
seq1098 111 2e-19
seq4643 104 2e-17
>seq1492
Length=9010
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | ||| | || | | |||||||| || ||||||||||||||
Sbjct 5053 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 4994
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||| || || |||| | |||| || |||||||| || |||||
Sbjct 4993 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 4934
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || ||| | |||| || | |||||||| ||| |||||
Sbjct 4933 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTG-TCAATGGTGTCGGACGATTCCAC 4875
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || || || || || || ||||||||
Sbjct 4874 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4827
Score = 114 bits (126), Expect = 1e-20
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| | ||| | | | |||||||| || |||||||||||| |
Sbjct 5281 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5222
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || || || ||||| | | |||| || ||||| ||||| || ||
Sbjct 5221 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 5162
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | ||| ||| |||||||||
Sbjct 5161 ATGCCCTCCTTGTC-CTGAATCTTGGACTTCACGTTG-TCAATGGTATCGCTCGACTCCA 5104
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| ||||| || ||||| ||||||||
Sbjct 5103 CCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 5055
Score = 84.2 bits (92), Expect = 2e-11
Identities = 129/184 (70%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| ||||||||||||||| | || || ||||| || || || ||||
Sbjct 4794 TTGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGG 4735
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| || || ||||| ||||| ||||| ||||| || || || ||| || || |
Sbjct 4734 CGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA 4675
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | ||||||| ||||||||||||| || | || |||||||| || || |
Sbjct 4674 CGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCT 4615
Query 138599 TTAC 138602
| ||
Sbjct 4614 TGAC 4611
>seq1098
Length=11580
Score = 111 bits (122), Expect = 2e-19
Identities = 338/517 (65%), Gaps = 19/517 (4%)
Strand=Plus/Plus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388
|| ||| | ||||| ||||| | ||||| || |||||| || | | | | | |
Sbjct 9798 CCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCC 9857
Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448
| || |||| | || ||||| || |||||||| | || || ||| ||||
Sbjct 9858 TTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTT 9917
Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508
||| ||||||| | | || | | ||| | ||||| |||||||| || |||||||
Sbjct 9918 GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAG 9977
Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACTACAAG--- 52562
| || || || ||||| || || ||||| |||||||| |||||| ||| | |
Sbjct 9978 CTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCACCTC 10037
Query 52563 -ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
| | |||| | | || | | || || ||| | ||| ||| || || ||
Sbjct 10038 AAGGGCCGTGCCAGCAA----GCA---GGTCA---TCCAGGACATCATCACCGATGCCGT 10087
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681
| || || ||||||| | || | || || || || ||||| |||||||||||
Sbjct 10088 CACCATTGAGCAGGAGTTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGC 10147
Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741
| |||| ||||||||||||| || || || || || | || ||| ||||
Sbjct 10148 CGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTC-GGCA 10206
Query 52742 GCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
| | ||| || ||| || ||| || || || || ||| | ||||| || || | |
Sbjct 10207 ACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTG 10266
Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||||||| ||||||||||| ||||| || ||
Sbjct 10267 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 10303
>seq4643
Length=2915
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || |||||||| || || || | | |
Sbjct 865 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 806
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 805 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 746
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||||| || | || || || || || || || ||
Sbjct 745 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGAC 686
Query 138603 AAAAATCTGCAT 138614
||| ||||||||
Sbjct 685 AAAGATCTGCAT 674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496146448290240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |