Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1098 277 2e-69
seq4643 125 7e-24
seq1492 125 7e-24
seq4729 114 1e-20
>seq1098
Length=11580
Score = 277 bits (306), Expect = 2e-69
Identities = 568/831 (68%), Gaps = 29/831 (3%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 10288 TTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 10229
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | |||||| ||| | |||||| || ||||||| || | |||||| ||||||
Sbjct 10228 GTGGCCTTGTAGACCTTCTCGTTGCCGA---GGGCGACGAGGAGGCGGTCGGCGACGAAC 10172
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800
|||||||| ||| |||| ||| || | || ||||| |||| || || || ||
Sbjct 10171 TCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGG-AGGGCCTC 10113
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCC---TAACGCGC-- 132855
||| || || ||||| |||| ||| || ||||||| ||| ||| | || ||
Sbjct 10112 GGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTT 10053
Query 132856 GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAG 132915
|| | || ||||| ||| | || | | | ||| ||||||||| || |
Sbjct 10052 GCTG-GCACGGCCCTTG----AGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGA 9998
Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975
|||||||| | || ||||| |||||| || |||| ||| ||||||||||| || ||
Sbjct 9997 CCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTC 9938
Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035
|||||||| || |||| ||| || || ||||||| ||||||||||| || ||
Sbjct 9937 TTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAG 9878
Query 133036 GCCACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATT 133093
|| || || |||| | || | | ||||| | |||| ||||| || | ||||| |
Sbjct 9877 GCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGG--ATCCATCGGATGGCCCAGT 9820
Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153
||||||| | || ||| || || || || |||||||| || | | || ||| |
Sbjct 9819 CGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAG--GTAGGTTCGTTG 9762
Query 133154 CCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211
||| | | ||||||||| |||||| ||| || | || ||||| | ||||||
Sbjct 9761 AGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTC 9702
Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271
||| ||| || |||||||| ||||| || |||||| | ||| || || |||
Sbjct 9701 CATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGACCTCGCCGCTGAA 9642
Query 133272 ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331
|||||||| || || ||||||||||||||||| ||| ||||| ||||| || | |||
Sbjct 9641 TCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAGGCGAGGATGTG 9582
Query 133332 CTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGA 133388
|| ||| |||||| | | ||| ||| | ||||||| | ||||||||
Sbjct 9581 GGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCTTGGA 9522
Query 133389 CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| || | ||||||| | ||||| || || |||||||| || ||||||||
Sbjct 9521 TAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 9471
>seq4643
Length=2915
Score = 125 bits (138), Expect = 7e-24
Identities = 163/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || || || |||||||| || || |||||| |||| || ||| |
Sbjct 671 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 730
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| ||||
Sbjct 731 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 789
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | || ||||| ||||| || || | |||||||| | ||||||
Sbjct 790 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 849
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| ||| || || || |||| || ||
Sbjct 850 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTCCG 888
>seq1492
Length=9010
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || ||||||||| | || || || | ||
Sbjct 4827 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAATCGTCC 4886
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | ||| || |||| ||||| || || ||||| | || |||
Sbjct 4887 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 4946
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | || ||||| ||||| || |||| || || |||| ||||||||||
Sbjct 4947 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 5006
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| |||| ||||| |||| || ||| || | || ||
Sbjct 5007 ATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGG 5053
Score = 107 bits (118), Expect = 2e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|||||||| ||||| ||| |||| |||||| || | || | | | | | | ||
Sbjct 4348 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 4407
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| || | ||||| ||||| || ||| ||||||| ||||| || |||| ||| |||||
Sbjct 4408 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 4467
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
||||| || || | ||||||||| ||| ||||||||||| ||||| |||| || ||
Sbjct 4468 CAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCA 4526
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||| || || |||||||| | || || ||| | | |
Sbjct 5055 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCGAGC 5114
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | ||||| ||||| || ||| | |||||
Sbjct 5115 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 5173
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || |||||||| |||| |||||||| |||||||||
Sbjct 5174 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAA 5233
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| |||| || ||| | || || ||| | | |||||
Sbjct 5234 CATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGG 5281
Score = 102 bits (112), Expect = 8e-17
Identities = 135/185 (73%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| || || ||||| || || || |||||| |||| || ||| | ||||||
Sbjct 4606 TAGTCGTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGA 4665
Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | |||| | || || |||| || || ||||| ||||| | ||||| |||||
Sbjct 4666 TCGACAACG-TCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGC 4724
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| |||| ||| ||||| ||||| || || | ||||||||| |||||||||||| ||
Sbjct 4725 CTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATTCAG 4784
Query 38430 AAGGA 38434
|||||
Sbjct 4785 AAGGA 4789
>seq4729
Length=2784
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 199 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 258
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 259 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 318
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| |||||||| || | || ||||| ||||||||||||||| |||
Sbjct 319 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 378
Query 38433 G 38433
|
Sbjct 379 G 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500055934625280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |