Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq398 248 1e-60 seq1098 132 6e-26 seq1223 91.5 2e-13 >seq398 Length=19136 Score = 248 bits (274), Expect = 1e-60 Identities = 972/1509 (64%), Gaps = 51/1509 (3%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGACTGGATGGTGTCTTGAT 111604 || ||||| ||||||| || ||| | |||||||| |||| || |||| | | Sbjct 13615 TACTTTGGCTTCAAGACTCTTGAGCGATCCTACCTCCTCAAGATTG-ATGGCAAGATTGT 13673 Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 || || ||| ||||| ||||||| || | |||| ||| || || |||||||| Sbjct 13674 TGAGCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCATCTGGGGTGACGATATTGA 13733 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAAC 111724 ||| ||||||| ||| || ||||| | | |||| ||| || | || || Sbjct 13734 GCGTGTCCTGGAGACCTACAACCTCATGTCGAGCAAGTTCTTCACCCATGCCTCCCCCAC 13793 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 ||||||||| |||||||| || || || ||||| || ||||| | | | || Sbjct 13794 CCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGATATGAA 13853 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 ||||| || | || ||||| | ||||||| |||||| ||||| ||| Sbjct 13854 AGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAAGAT 13913 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 ||| ||||||||||| || || |||| || | |||| ||| || || Sbjct 13914 GGCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGCTCTTACATCGCTGG 13973 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 ||| || ||| || | ||| | | ||| |||||||| || || ||| ||| || || Sbjct 13974 TACCAACGGTACCTCCAACGGTGTCACTCCCATGCTTCGTGTCTTCAACAACACTGCCCG 14033 Query 111965 CTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCC 112018 || || |||| | ||| |||| || || | || |||| |||||||| Sbjct 14034 GTACGTCGACCAGGGTGGCAA---CAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCC 14090 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGC 112078 |||||||| ||| || | ||||||||||| |||| ||||| || | ||||||| Sbjct 14091 CTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGT 14150 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 || |||||| || ||| |||||||||||||| ||||||||||||||| | || || Sbjct 14151 CCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGA 14210 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCG 112197 | ||| || | ||| | ||| | ||||| || || |||||||| |||| ||| Sbjct 14211 GAAGAACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTA 14270 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG------AAAGTCGGGCGA 112251 | || |||||||| || || || ||| |||||| ||| | | | |||| || Sbjct 14271 T-GGCGAGGAGTTCGAGGCTCTTTACGAAAAGTATGAGAAGGCGGGCAAGGGTCGCAAGA 14329 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 | || || |||| || | ||| | || || ||| || | || |||||||| | Sbjct 14330 CCATGAAGG-CCCAGAAGC-----TCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCG 14383 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 | | || | ||||| ||||| ||| ||| |||| ||||| || || ||||| ||| Sbjct 14384 GCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGG 14443 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 | ||| || ||||| ||||| || || || | || | | | |||||| Sbjct 14444 GCACCATCCGTAGCTCCAATCTCTGCACCGAGATTATCGAGTACTGCGCCCCTGATGAGG 14503 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||||| || ||||| || || | || || || | || || || || | || Sbjct 14504 TTGCTGTCTGCAACCTTGCTTCTCTGGCCCTGCC----TTCGTTCAT-CAACTACGATGA 14558 Query 112492 CATTTGATTATG------AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||| |||| | || | ||||| || || | |||| ||||| | Sbjct 14559 TGCTTG-CTATGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGA 14617 Query 112546 ACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGAC 112605 |||| |||| || || ||||| ||| | ||||| || || ||| ||| Sbjct 14618 ACAGGATTATCGACGTGAACCACTACCCTGTTACGGAAGCTCGCAACAGCAACATGCGAC 14677 Query 112606 ACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCAC 112664 |||| || |||||| | |||||||| ||||| || |||| ||| || || || || || Sbjct 14678 ACCGACCCATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTG-CG-CAT 14735 Query 112665 GCATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCA 112723 || ||| || || ||| || || |||| || || || ||||| || || || Sbjct 14736 GCCTTTCGAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCA 14795 Query 112724 CGCCGCTCTTGAGGCGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780 || || || || ||||| || |||| ||| || ||||| || ||||| Sbjct 14796 TGCTGCCCTCACTGC---TTCGGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTT 14852 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 112840 |||| ||||| || || | || | || || || || |||| |||| |||| | | Sbjct 14853 CAAGGGCTCTCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAATGTGA-AGCCT 14910 Query 112841 GCT--TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 112898 || | || |||||||| ||| ||| | |||||||| | || |||| ||| Sbjct 14911 TCTGACCTCTGGGACTGGGAGAACCTCCGGGAGCAGGTCAAGGAGCACGGCATTCGCAAC 14970 Query 112899 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 112958 ||||| || | || || ||||| || ||| || | || ||| |||| || || || Sbjct 14971 AGTCTGCTGCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAG 15030 Query 112959 TGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTG 113018 ||||| || || ||||| | |||||||| | | | | |||||| || ||||| | Sbjct 15031 TGCTTCGAGCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGTTCCAG 15090 Query 113019 ATTGTCAAC 113027 | |||||| Sbjct 15091 GTCGTCAAC 15099 >seq1098 Length=11580 Score = 132 bits (146), Expect = 6e-26 Identities = 204/286 (71%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 102106 ||||| |||| || || ||||| |||| | | ||| | | ||||| | ||||| | Sbjct 9732 CTCATTGACACCTACATCAAGGAGCCTGCTCA-ACGAACCTACCTCTTCAACGCCATTGA 9790 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 || | || || || | ||||| || || ||||| || ||| | | |||| Sbjct 9791 GACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAA 9850 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | ||| |||||||| |||| ||| |||| ||||| || ||||||||||||||| | Sbjct 9851 CTCGT-CCTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCG 9909 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || |||| | | || | |||||||||||||| || |||||||| || || ||| | Sbjct 9910 GTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTT 9969 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||||| ||||||||||||||||| || ||| || ||||| Sbjct 9970 CCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 10015 >seq1223 Length=10093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 302/461 (66%), Gaps = 18/461 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || || || || | | || | || || ||||| | || || || || Sbjct 8955 CGATCAAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGGTTGGTACCG 8896 Query 15945 GCGATGACAACAATACCTGTTTC--GTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | ||| |||| |||| | | | | | ||||| |||||||| |||| || ||||| Sbjct 8895 GCCAGGACGACAA--CCTGCTCCCGGGTGTTGAAACCGTCCATCTCGGTCAGAATCTGGT 8838 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGC---GTTGCTTTC 16059 | | ||| ||||| || || || | | ||| | |||| || || || Sbjct 8837 TCAGAGTCGCCTCCCGCTCGTCGTTGCCACCGAAACCCCGGCCACTCTCCTGTCGCGCTC 8778 Query 16060 ---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 16116 | | ||| || |||||||| || |||| |||||| || || | || | | Sbjct 8777 GACCAATGGCGTCGATCTCATCGATAAAGATGATGCAAGGAGCGTTCTTACGGCCTTCGG 8718 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 | || || || || ||||| | || ||||||||||||||||| || || | | Sbjct 8717 CGAACAGGTCTCGCACACGGGAAGGACCAACACCAACAAACATCTCGACGAATTCAGAAC 8658 Query 16177 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || ||| || | ||||||||| ||| || || || | || |||||| | ||| Sbjct 8657 CGCTCACACTGAA-GAAGGGGACTCCAGACTCGCCAGCTGTAGCCTTGGCGAGCAATGTC 8599 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC 16293 ||||||||||| || || || || | ||| ||||| ||||||||||| || |||| Sbjct 8598 TTACCCGTACCAGGGGGGCCAGCCAGAATGGCTCCTCGGGGAATCTTGGCACCGAGCTTC 8539 Query 16294 -CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 |||| | |||| || ||||| || || ||||| ||| Sbjct 8538 TCAAACT---TCTCGGGCTGCTTCAGGAAGCTCACAAACTC 8501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620597363538240