Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1223 138 1e-27 seq1098 104 3e-17 seq330 86.0 7e-12 >seq1223 Length=10093 Score = 138 bits (152), Expect = 1e-27 Identities = 318/466 (68%), Gaps = 26/466 (6%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| || || || || || | | || | || || ||||| | ||||| ||| || Sbjct 8955 CGATCAAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGGTTGGTACCG 8896 Query 11563 GCAATGACTACAATGCCAG-TCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| |||| || | || | ||| |||||||||||| || || |||| ||||| Sbjct 8895 GCCAGGACGACAA--CCTGCTCCCGGGTGTTGAAACCGTCCATCTCGGTCAGAATCTGGT 8838 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677 | | ||| || ||||| |||||| | ||| || ||| || || || | Sbjct 8837 TCAGAGTCGCCTCCCGCTCGTCGTTGCCACCGAAACC-CCGGCC--ACTCTCCTGTCGCG 8781 Query 11678 --CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 |||| ||||| ||||||||||| || | ||| || || ||| ||| | | Sbjct 8780 CTCGACCAATGGCGTCGATCTCATCGATAAAGATGATGCAAGGAGCGTTCTTACGGCCTT 8721 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 |||| || || || ||||| | |||||||| || |||||||| ||||| | | Sbjct 8720 CGGCGAACAGGTCTCGCACACGGGAAGGACCAACACCAACAAACATCTCGACGAATTCAG 8661 Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | || | ||||||| |||||| || |||||| ||||| | || ||||| | Sbjct 8660 AACCGCTCA-CACTGAA-GAAGGGGACTCCAGACTCGCCAGCTGTAGCCTTGGCGAGCAA 8603 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--A 11907 ||||||||||||||||| | ||||| |||| ||| || ||||| ||||||||||| Sbjct 8602 TGTCTTACCCGTACCAGGGGGGCCAGCCAGAATGGCTCCTCGGGGAATCTTGGCACCGAG 8543 Query 11908 CTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||| |||| | ||| |||| ||| |||||| ||||| |||| Sbjct 8542 CTTCTCAAACT---TCTCGGGCTGCTTCAGGAAGCTCACAAACTCC 8500 >seq1098 Length=11580 Score = 104 bits (114), Expect = 3e-17 Identities = 200/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || |||||||||||||| || ||| || ||||||||||| || Sbjct 10003 TGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCA 9944 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||| || |||||||| ||||| || Sbjct 9943 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCA 9884 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683 || || |||| ||||||| ||| ||||| |||| |||||| || ||| || || Sbjct 9883 GCAAAGGCGACGAGACGCTGAGC-AAAGGACGAGTTCTTGTCCTGGATCCATCGGATGGC 9825 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCT 119742 ||||| |||||| |||||||||| || | ||||| | ||| | || | ||| Sbjct 9824 CCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTC- 9766 Query 119743 TTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 || |||| ||||| || || | |||||||| ||||||||||| Sbjct 9765 GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 9717 >seq330 Length=20877 Score = 86.0 bits (94), Expect = 7e-12 Identities = 213/321 (66%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TCGAAAAG 11741 ||||||| ||||||||| || || || || |||| || || | | | ||| || Sbjct 16724 GCGTCAAGCTCATCGATAAAGACAATTGCAGGAGACTTGG-ACTTGGCAGCGTTGAAGAG 16666 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 || || || ||||| ||||| ||||| || || ||||| | || | |||| Sbjct 16665 CTCGCGAACTCGCTTGGCTCCGACACCCACAAAGATCTCGTCAAACTCGCTACCAGACAT 16606 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 | | ||||||||| | ||| ||||| | |||||| || || |||||||| || || Sbjct 16605 GTAGAAGAAGGGAACTCCGGCCTCGCCAGCAACGGCTCGGGCAAGAAGAGTCTTTCCGGT 16546 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCG 11921 ||| || | ||| | || || | || ||| | |||||||||| | | | Sbjct 16545 ACCGGGAGGGCCAACCAGGAGAACACCCTTGGGCAGCTTGGCACCAAGGTCGCTGAACTT 16486 Query 11922 CTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACC 11981 || || |||||||| || || || | ||||| || ||||||||||| |||| || Sbjct 16485 TTCGGGGTTCTTGAGAAACTCGACCACCTCCTGGAGCTCCTCCTTGGCCTCGTCGCAGCC 16426 Query 11982 CTCAACATCGGTGAAACGAGT 12002 | |||||| |||| || || Sbjct 16425 GTGGACATCGCTGAATCGTGT 16405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588838385757600