Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1492 154 3e-32
seq4729 125 2e-23
seq4643 120 7e-22
seq398 84.2 5e-11
>seq1492
Length=9010
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||| ||||| ||||| || || || ||||| ||| ||||||| || || ||
Sbjct 5036 AACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTC 4977
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || || ||||| ||||| ||||| || |||||||||||||| ||||| ||
Sbjct 4976 GAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTG 4917
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || || || || ||||||||||| || |||||| |||||||| | |||||
Sbjct 4916 GATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTT 4857
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || | || || ||||| | |||||
Sbjct 4856 TCCGGTGAGGGTCTTGACGAAGATCTGCAT 4827
Score = 132 bits (146), Expect = 1e-25
Identities = 158/213 (74%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||| ||||| || ||||| || || || ||||| |||| || || | || |||||
Sbjct 5264 AACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTC 5205
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||||| || ||||||||||| || ||||| || || ||||| || ||||| ||
Sbjct 5204 CAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 5145
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGT 195107
||| || ||| ||||| |||||||| || ||| ||||| || || || | ||
Sbjct 5144 AATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA---CTCCACCTCCAGAGTGATGGT 5088
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||| || | ||| || || || | |||||
Sbjct 5087 CTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 5055
>seq4729
Length=2784
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||| |||| ||||| || |||||||| || ||||||||
Sbjct 377 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 318
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
||||| || ||||| || || ||||| || ||||| || || || |||||| || |||
Sbjct 317 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 258
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
||||||||||| || || || ||||| | ||||| || |||| || || |||||
Sbjct 257 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 199
>seq4643
Length=2915
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||| ||| || || || ||||| ||| || || | ||||| |||
Sbjct 882 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 823
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| ||||| || ||||| || || ||||| || ||||| ||
Sbjct 822 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 763
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| ||| ||||| || ||||| | |||||
Sbjct 762 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTC 703
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || || || | |||||
Sbjct 702 CCCGTGAGGGTCTTGACAAAGATCTGCAT 674
>seq398
Length=19136
Score = 84.2 bits (92), Expect = 5e-11
Identities = 182/267 (68%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658
|||||| | ||||||| ||||||||| | || | | || || || |||| ||| | |
Sbjct 14177 TCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTGACTGGACCCTCATGT 14236
Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718
||||||| || || || || | || ||||| ||||||||| ||||||| |
Sbjct 14237 GTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGAGGCTCTTTACG 14296
Query 160719 AAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCAT 160777
||| || || || | ||| ||| | | || | | |||||||||| | || ||| ||
Sbjct 14297 AAAAGTATGAGAAGGCGGGCAAGGGTCGCAA-GACCATGAAGGCCCAGAAGCTCTGGTAT 14355
Query 160778 CACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATC 160837
|||||| | || || |||| || | ||||| || |||||||| ||| |
Sbjct 14356 GCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA--CCA-C 14412
Query 160838 TGT---CGCAAGAGTAACCAGAAGAAC 160861
|| |||||||| ||||||||||||
Sbjct 14413 TGCAACCGCAAGAGCAACCAGAAGAAC 14439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109215888864764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |