Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq593 113 4e-20
seq1402 82.4 6e-11
>seq593
Length=14316
Score = 113 bits (124), Expect = 4e-20
Identities = 201/289 (70%), Gaps = 7/289 (2%)
Strand=Plus/Plus
Query 29686 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACC 29745
|||||||| || |||| | |||||||| ||||| | |||| | | | ||| ||
Sbjct 9670 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 9728
Query 29746 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 29801
|| || | | ||| ||| |||||| | |||||| | ||| ||||| || ||
Sbjct 9729 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 9788
Query 29802 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCC 29861
|| | |||||||| || ||||||||||| || || |||| | ||| | | || |
Sbjct 9789 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTG-AGTGAGGCTGC 9847
Query 29862 C-GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29920
| || | | || |||||| |||||||||| || || || | ||||||||| ||||
Sbjct 9848 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 9907
Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969
| || || || ||||| |||||||| | || | |||||||||||| ||
Sbjct 9908 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 9956
Score = 93.3 bits (102), Expect = 3e-14
Identities = 184/270 (68%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174
||||| || || ||| | |||| |||||| | | | || |||||| || || ||
Sbjct 10141 AGCTGGTCGACGCCCTTGCCCGTGTAGTCCGTCTTGGCATCAACGTACTCGGCGCCAAAG 10200
Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234
|| | ||| ||||| |||||||| || || || || || | || | ||| | || |||
Sbjct 10201 TGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTCGCGGTGGTTGAGGCCG 10260
Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294
||||| | || || | ||| || ||| ||||||||||||| | || |||| |
Sbjct 10261 AGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTG 10320
Query 30295 AGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30353
|| ||||| |||| ||||| || |||||| || ||||| | | ||||||
Sbjct 10321 AGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCG 10379
Query 30354 CCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
||||| | |||||| |||||||||||
Sbjct 10380 GGTGAAGACGCGCTTGGTGGTGAGGAGGGG 10409
>seq1402
Length=9781
Score = 82.4 bits (90), Expect = 6e-11
Identities = 129/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Minus
Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074
||||||||| | ||||||| ||| | || |||| |||||||||||||| ||
Sbjct 4235 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 4176
Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132
|||||| || ||||| || || | | ||| | | | ||||||| |||||||||
Sbjct 4175 TCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGTC--AGGAGGATATGCCCTTCAG 4119
Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192
|| ||| || ||| || ||| | ||||| |||||||||||| |||| || | |||||
Sbjct 4118 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 4059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408524513335316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |