Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq593 113 4e-20 seq1402 82.4 6e-11 >seq593 Length=14316 Score = 113 bits (124), Expect = 4e-20 Identities = 201/289 (70%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 29686 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACC 29745 |||||||| || |||| | |||||||| ||||| | |||| | | | ||| || Sbjct 9670 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 9728 Query 29746 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 29801 || || | | ||| ||| |||||| | |||||| | ||| ||||| || || Sbjct 9729 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 9788 Query 29802 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCC 29861 || | |||||||| || ||||||||||| || || |||| | ||| | | || | Sbjct 9789 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTG-AGTGAGGCTGC 9847 Query 29862 C-GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29920 | || | | || |||||| |||||||||| || || || | ||||||||| |||| Sbjct 9848 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 9907 Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 | || || || ||||| |||||||| | || | |||||||||||| || Sbjct 9908 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGCTGGCA 9956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 ||||| || || ||| | |||| |||||| | | | || |||||| || || || Sbjct 10141 AGCTGGTCGACGCCCTTGCCCGTGTAGTCCGTCTTGGCATCAACGTACTCGGCGCCAAAG 10200 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || | ||| ||||| |||||||| || || || || || | || | ||| | || ||| Sbjct 10201 TGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTCGCGGTGGTTGAGGCCG 10260 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294 ||||| | || || | ||| || ||| ||||||||||||| | || |||| | Sbjct 10261 AGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGATGCCGGCCTCGCTG 10320 Query 30295 AGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30353 || ||||| |||| ||||| || |||||| || ||||| | | |||||| Sbjct 10321 AGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCG 10379 Query 30354 CCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||||| | |||||| ||||||||||| Sbjct 10380 GGTGAAGACGCGCTTGGTGGTGAGGAGGGG 10409 >seq1402 Length=9781 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074 ||||||||| | ||||||| ||| | || |||| |||||||||||||| || Sbjct 4235 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 4176 Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132 |||||| || ||||| || || | | ||| | | | ||||||| ||||||||| Sbjct 4175 TCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGTC--AGGAGGATATGCCCTTCAG 4119 Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192 || ||| || ||| || ||| | ||||| |||||||||||| |||| || | ||||| Sbjct 4118 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 4059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408524513335316