Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1098 141 3e-28 seq75 132 1e-25 seq398 125 2e-23 seq1402 87.8 5e-12 >seq1098 Length=11580 Score = 141 bits (156), Expect = 3e-28 Identities = 247/354 (70%), Gaps = 4/354 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| ||||| ||| || || | ||||| |||||| || ||||| || || | Sbjct 9664 CCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 9723 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | || || ||||| || |||||||| || | | || | | || || | |||||| Sbjct 9724 ACTCGCTCCTCATTGACACCTACATCAAGGAGCCTGCTCA-ACGAACCTACCTCTTCAAC 9782 Query 133424 GCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || ||| || || ||||| | |||||||| || ||||||||| Sbjct 9783 GCCATT-GAGACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCA 9841 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||||||| || |||||| |||||||| || ||||||| || ||||| || || Sbjct 9842 GGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTT 9901 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || ||||| || |||||||| | | ||||| || Sbjct 9902 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 9961 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | ||||| ||||| || || || | ||||||| ||||||||||| ||||| Sbjct 9962 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 10015 >seq75 Length=34143 Score = 132 bits (146), Expect = 1e-25 Identities = 193/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||| | | ||||| | || |||||||| ||||| || | || || || || Sbjct 31079 GTCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTAACCCGTCTCGGCGGTCTTGACCGC 31020 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 |||||||| ||||| | |||||| |||| || |||||||| | ||| || || Sbjct 31019 GGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGGAAGGAGTGAG 30960 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | || | | ||| |||| ||||||||||| || |||||||| | ||| |||||| Sbjct 30959 ACCACGAAGATACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCGTCCTTGGT 30900 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || ||||| || | || || | ||| | || |||||||| || || ||| |||| Sbjct 30899 GAAATGAGGCAGCGTGCGGTACTTGAATCCGAAGGGAATACGCTTGCCTTCGACGATCTG 30840 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||| | | | ||||||||||||| || Sbjct 30839 CTGTCCGACAAGGGCAGTCATCTGCGAAATGTT 30807 >seq398 Length=19136 Score = 125 bits (138), Expect = 2e-23 Identities = 566/885 (64%), Gaps = 19/885 (2%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | |||||| ||| || || || || ||||||||| | ||||||| Sbjct 14491 CGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTACGGATGGTGCCCAGGTTCTTCT 14432 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| || |||||||| || ||| | ||| | || ||||| ||| Sbjct 14431 GGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCT 14372 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || || || |||||| | |||| || || |||| |||| Sbjct 14371 GCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCG 14312 Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863 || |||||| |||| || | ||| | | | ||||| || || || || ||| || Sbjct 14311 CCTTCTCATACTTTTCGTAAAGAGCCTC--GAACTCCTCGCCATAGCAGTCGGCCAGACC 14254 Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCAT 155920 ||||||| | ||| || | || | ||| | || || ||| |||||| ||| Sbjct 14253 GGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGA---CACGCTTCAT 14197 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 || | ||| ||| | ||| ||| ||||| | || |||||| | ||| Sbjct 14196 GAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCC 14137 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| ||||| || || || | ||| || | ||| | || ||||| || || || Sbjct 14136 GTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGAT 14077 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 ||||| |||| | |||| |||||||| || || ||||| ||||| || ||||| Sbjct 14076 GGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAA 14017 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAAC 156156 ||||| ||||| ||| | | ||| ||||| || || ||||| || ||| || | || | Sbjct 14016 GACACGAAGCATGGGAGTGACACCGTTGGAGGTACCGTTGGTACCAGCG-ATGTAAGAGC 13958 Query 156157 CAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGA 156215 ||| | || | || | | || || |||||||| | |||| || || || Sbjct 13957 CAGTGGCACGGATTCGGTGGACGTTCAGGCCGATACCACCCG-CCATCTTGGAGATCATG 13899 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 || || ||| | ||||| ||||||| ||||| || |||| ||| | || Sbjct 13898 GCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATATCGACCAGG 13839 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 |||| || | ||||| | || || ||||| ||||| || || || | ||||| Sbjct 13838 AAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGG 13779 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCC 156394 | || |||| | ||||| | ||| |||||| | ||||| || |||| Sbjct 13778 GTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCC 13719 Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454 | || | || ||| || | ||| ||| ||||| |||||||| |||||| ||||| Sbjct 13718 CAG-ATGCCGACAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATC 13660 Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| || ||||| | || || ||||| || || || || || Sbjct 13659 AATCTTGAGGAGGTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTA 13615 >seq1402 Length=9781 Score = 87.8 bits (96), Expect = 5e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GCGAGA 251483 || || ||||| | | | ||||| || | ||| | || || ||||| ||| ||| | Sbjct 3636 CAGACGTGGACTCGGAAGGCATCCGACACCTCAAACAGACGCTCCTTGAGGAAAGCGGCA 3695 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 || ||||| | |||||| |||||||| ||||| || ||||| || ||||||||||| || Sbjct 3696 -GCTCCGTGGGCAATCATGCAATCACGTTCCATCTCTCCGAATCGCAGACCACCATCTCG 3754 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||| ||| | ||||| ||||| Sbjct 3755 GGCACGACCTTCGACGGGCTGGCGAGT 3781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471465112563204