Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1098 141 3e-28
seq75 132 1e-25
seq398 125 2e-23
seq1402 87.8 5e-12
>seq1098
Length=11580
Score = 141 bits (156), Expect = 3e-28
Identities = 247/354 (70%), Gaps = 4/354 (1%)
Strand=Plus/Plus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| ||||| ||| || || | ||||| |||||| || ||||| || || |
Sbjct 9664 CCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 9723
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423
| || || ||||| || |||||||| || | | || | | || || | ||||||
Sbjct 9724 ACTCGCTCCTCATTGACACCTACATCAAGGAGCCTGCTCA-ACGAACCTACCTCTTCAAC 9782
Query 133424 GCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|||||| | || ||| || || ||||| | |||||||| || |||||||||
Sbjct 9783 GCCATT-GAGACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCA 9841
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||||||| || |||||| |||||||| || ||||||| || ||||| || ||
Sbjct 9842 GGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTT 9901
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || ||| || || ||||| || |||||||| | | ||||| ||
Sbjct 9902 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 9961
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| ||||| ||||| || || || | ||||||| ||||||||||| |||||
Sbjct 9962 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 10015
>seq75
Length=34143
Score = 132 bits (146), Expect = 1e-25
Identities = 193/273 (71%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630
|||||| | | ||||| | || |||||||| ||||| || | || || || ||
Sbjct 31079 GTCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTAACCCGTCTCGGCGGTCTTGACCGC 31020
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690
|||||||| ||||| | |||||| |||| || |||||||| | ||| || ||
Sbjct 31019 GGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGGAAGGAGTGAG 30960
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | || | | ||| |||| ||||||||||| || |||||||| | ||| ||||||
Sbjct 30959 ACCACGAAGATACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCGTCCTTGGT 30900
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| || ||||| || | || || | ||| | || |||||||| || || ||| ||||
Sbjct 30899 GAAATGAGGCAGCGTGCGGTACTTGAATCCGAAGGGAATACGCTTGCCTTCGACGATCTG 30840
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|||||| | | | ||||||||||||| ||
Sbjct 30839 CTGTCCGACAAGGGCAGTCATCTGCGAAATGTT 30807
>seq398
Length=19136
Score = 125 bits (138), Expect = 2e-23
Identities = 566/885 (64%), Gaps = 19/885 (2%)
Strand=Plus/Minus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | |||||| ||| || || || || ||||||||| | |||||||
Sbjct 14491 CGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTACGGATGGTGCCCAGGTTCTTCT 14432
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
|||| || | ||| || |||||||| || ||| | ||| | || ||||| |||
Sbjct 14431 GGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCT 14372
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || || || || |||||| | |||| || || |||| ||||
Sbjct 14371 GCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCG 14312
Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863
|| |||||| |||| || | ||| | | | ||||| || || || || ||| ||
Sbjct 14311 CCTTCTCATACTTTTCGTAAAGAGCCTC--GAACTCCTCGCCATAGCAGTCGGCCAGACC 14254
Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCAT 155920
||||||| | ||| || | || | ||| | || || ||| |||||| |||
Sbjct 14253 GGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGA---CACGCTTCAT 14197
Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980
|| | ||| ||| | ||| ||| ||||| | || |||||| | |||
Sbjct 14196 GAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCC 14137
Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040
||| ||||| || || || | ||| || | ||| | || ||||| || || ||
Sbjct 14136 GTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGAT 14077
Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097
||||| |||| | |||| |||||||| || || ||||| ||||| || |||||
Sbjct 14076 GGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAA 14017
Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAAC 156156
||||| ||||| ||| | | ||| ||||| || || ||||| || ||| || | || |
Sbjct 14016 GACACGAAGCATGGGAGTGACACCGTTGGAGGTACCGTTGGTACCAGCG-ATGTAAGAGC 13958
Query 156157 CAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGA 156215
||| | || | || | | || || |||||||| | |||| || || ||
Sbjct 13957 CAGTGGCACGGATTCGGTGGACGTTCAGGCCGATACCACCCG-CCATCTTGGAGATCATG 13899
Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275
|| || ||| | ||||| ||||||| ||||| || |||| ||| | ||
Sbjct 13898 GCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATATCGACCAGG 13839
Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335
|||| || | ||||| | || || ||||| ||||| || || || | |||||
Sbjct 13838 AAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGG 13779
Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCC 156394
| || |||| | ||||| | ||| |||||| | ||||| || ||||
Sbjct 13778 GTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCC 13719
Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454
| || | || ||| || | ||| ||| ||||| |||||||| |||||| |||||
Sbjct 13718 CAG-ATGCCGACAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATC 13660
Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
||| || ||||| | || || ||||| || || || || ||
Sbjct 13659 AATCTTGAGGAGGTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTA 13615
>seq1402
Length=9781
Score = 87.8 bits (96), Expect = 5e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GCGAGA 251483
|| || ||||| | | | ||||| || | ||| | || || ||||| ||| ||| |
Sbjct 3636 CAGACGTGGACTCGGAAGGCATCCGACACCTCAAACAGACGCTCCTTGAGGAAAGCGGCA 3695
Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543
|| ||||| | |||||| |||||||| ||||| || ||||| || ||||||||||| ||
Sbjct 3696 -GCTCCGTGGGCAATCATGCAATCACGTTCCATCTCTCCGAATCGCAGACCACCATCTCG 3754
Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||| ||| | ||||| |||||
Sbjct 3755 GGCACGACCTTCGACGGGCTGGCGAGT 3781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471465112563204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |