Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2077 192 7e-43 seq1098 156 5e-32 seq398 134 2e-25 seq416 125 9e-23 seq1475 120 4e-21 seq75 93.3 5e-13 >seq2077 Length=8069 Score = 192 bits (212), Expect = 7e-43 Identities = 280/396 (71%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||| |||||||||||| | || || ||| | Sbjct 1157 GGCGAGTCCCACGGCAAGTCAGTCTCGTGCATCATCGACAACTGCCCCCCCAACATTGCC 1216 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||||||||| ||| | | || ||||| ||||||||| || | Sbjct 1217 CTCACCGAGGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCGGGCCAGTCGGCCATC 1276 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| || ||||| ||||| |||| |||||| |||||||| ||||||||| || Sbjct 1277 ACGACGCCCCGGAACGAAAAGGATCGTGTCACCATCCACTCGGGCACCGAGAACGGCGTC 1336 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339 || |||||| | || || |||| || ||||| |||||||||||| ||||| Sbjct 1337 ACCCTCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGACCAGCGGCCCAAGGACTAC 1396 Query 18340 TCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 ||||| | || | ||||| ||| |||||||||| |||||| ||| Sbjct 1397 GGCGACAAGACCATCGACCTCTACCCGCGCCCCAGCCACGCCGACTGGACCTACCTGGAA 1456 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||||||| ||||||| ||||| || || || || ||||| || |||||| || Sbjct 1457 AAGTACGGCGTCAAGGCCTCGTCCGGTGGTGGTCGCAGCTCTGCTCGTGAGACCATCGCT 1516 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489 | ||||||||||| || ||||| || || |||||| Sbjct 1517 AGAGTCGCCGCCGGTGCTGTCGCTGAAAAGTGGCTC 1552 Score = 118 bits (130), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||||||| || || ||||| || || ||||| | |||||||||||| Sbjct 1775 GACAGCACCGGCGGCACCGTCACCTGCGTCATCCGTAATGTGCCCTCTGGCCTCGGCGAG 1834 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | |||||| ||||| ||||||||| |||| ||||| ||| | Sbjct 1835 CCCTGCTTCGACAAGCTGCAGGCCGTCCTCGCACACGCCATGATGTCCATCCCCGCCGTC 1894 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTTGCGGGTGC 19201 |||| || ||| ||||| ||| ||| ||| || Sbjct 1895 AAGGCCTTTGAGTTTGGCTCCGGCTTTCTGGGCGC 1929 >seq1098 Length=11580 Score = 156 bits (172), Expect = 5e-32 Identities = 214/291 (74%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| ||||| ||||| ||||||||||| ||||| Sbjct 9998 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 9939 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| ||||||| | | || || ||| ||| ||||| ||||||||||| ||| Sbjct 9938 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCA 9881 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 ||| ||| ||| |||| |||||| | |||| | |||| | |||||| || Sbjct 9880 AAGGCGACGAGACGCTGAGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGGATG 9827 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412 |||||||||||||| || | | | || | || || |||||| ||||||| ||| Sbjct 9826 GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTT 9767 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || || ||||||| |||||||| || |||||||| |||||||| Sbjct 9766 C-GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 9717 Score = 154 bits (170), Expect = 2e-31 Identities = 185/250 (74%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 10312 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 10253 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| ||||| | || Sbjct 10252 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGACG 10193 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 10192 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 10133 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| ||||| | ||| || |||||| ||| |||| Sbjct 10132 AGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 10073 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 10072 ATGT-CCTGG 10064 >seq398 Length=19136 Score = 134 bits (148), Expect = 2e-25 Identities = 300/448 (67%), Gaps = 17/448 (4%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| || |||||||| || |||||||| Sbjct 14046 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGAGTGACACCGTTGGA 13987 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||| | ||| || | ||| || | ||| Sbjct 13986 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 13927 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || || ||||| || || || || ||||| Sbjct 13926 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 13867 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| | ||||| || || || ||||| || || || || || | || || Sbjct 13866 AATGCTGTCCTCTTTCATATCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 13807 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || |||||||| ||||| | || |||||| |||| | ||||||| || |||||| Sbjct 13806 AGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTCGACATGAGGTTGTAGGT 13747 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | || || ||| | | |||||| |||| || ||||| | || Sbjct 13746 CTCCAGGACACGCTCAA---TATCGTC-----------ACCC-CAGATGCCGACAGACAC 13702 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| ||||| || | ||| | |||| |||||||| Sbjct 13701 ACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 13642 Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTA 1630511 | || || | ||| ||| ||||||||| Sbjct 13641 TC-GCTCAAGAGTCTTGAAGCCAAAGTA 13615 Score = 113 bits (124), Expect = 6e-19 Identities = 288/443 (65%), Gaps = 8/443 (2%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || ||||||||||| || |||| | ||| | || |||||||||| ||||||| Sbjct 14485 ACTCGATAATCTCGGTGCAGAGATTGGAGCTACG-GATGGTGCCCAGGTTCTTCTGGTTG 14427 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| | |||||||| ||||||| |||| |||||||||| |||||||| Sbjct 14426 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCC 14367 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340 ||| |||||| |||||| || | || || | | || | |||| Sbjct 14366 TCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCGCCTTC 14307 Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400 || || || |||| ||||| ||| ||| ||||| | Sbjct 14306 TCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCAC 14247 Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG---CGGCGCATAAAGAGG 1628457 ||| ||||| | ||| | ||||| ||||| || | || || ||| ||||| Sbjct 14246 TCGTTGGGACACATGAGGGTCCAGT---CACCGTTCTTCTCGACACGCTTCATGAAGAGA 14190 Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517 || |||| || || || |||||||| || ||| ||||||||||||||||||| Sbjct 14189 TCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 14130 Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577 || ||||| || | || | | || |||||||| ||||| |||||| ||||||| Sbjct 14129 TTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAG 14070 Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600 || || |||||| ||| || Sbjct 14069 GCACCAGGTCGCTTGTTGCCACC 14047 Score = 109 bits (120), Expect = 7e-18 Identities = 358/545 (66%), Gaps = 20/545 (4%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTG-GTGCGCAGATAGTACATGC 1627039 |||||||||||| |||||||||| | ||||| | |||| || ||||| |||||||||| Sbjct 15447 CTGGTCGACGGTGAACTGGATGGGAGCAGCGGCAG-CCTGCGTTCGCAGGTAGTACATGC 15389 Query 1627040 CGGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGC-GCTCGGGCGTC 1627098 | ||||| |||||| | ||| || |||||| ||||| || | | || Sbjct 15388 CCGTCTTCAGGCCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATG-GTG 15330 Query 1627099 GCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCC 1627158 | ||| || | |||||| |||||| ||| || | ||| | || ||||| Sbjct 15329 GGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCA 15270 Query 1627159 GCCATGTCGATGGTGACCCGGTTGGGC---ACCTCCCACACGGTCTTGAAGATGGCCTTG 1627215 ||||| | | | ||| || || | |||||| ||||||||| ||| ||||||| Sbjct 15269 GCCATCTGAACG---ACCTGGCGCTGCGAAATCTCCCAGACGGTCTTGTAGAGGGCCTTG 15213 Query 1627216 AGGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGC 1627275 | |||| || | | | | | | ||| | || |||| | | || | || Sbjct 15212 ACCTCGGCGGGGATGTTGGGG------ATGTTCTGGATGGAACCGTTCTCGGCAATGATT 15159 Query 1627276 CTGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCA-GGCGCTTGACCAGGTGGCG 1627334 | || | | | || ||||||||| | | || || || ||||| ||| | | Sbjct 15158 CGGTTTTTCATGGCATCCGACCACAGGCC-CATGTCAACAAGGTCCTTGAGCAGCCAGGG 15100 Query 1627335 GTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGAC 1627394 |||||| || || ||||| | ||| || |||||| |||||||||| |||| Sbjct 15099 GTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGG 15040 Query 1627395 CTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCAC 1627454 |||| | |||| ||||||||||||||||||| || |||| || ||||| | || | Sbjct 15039 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAG 14980 Query 1627455 GAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCC 1627513 || || |||||| | |||||||| | || || || | || || |||||||||| Sbjct 14979 CAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCT-GCTCCCGGAGGTTCTCCCAGTCCC 14921 Query 1627514 AGCGG 1627518 || || Sbjct 14920 AGAGG 14916 >seq416 Length=18296 Score = 125 bits (138), Expect = 9e-23 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| |||||||||||||| || || ||| | || |||||| | || |||||| Sbjct 11152 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 11211 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||| || ||||| || ||||||| Sbjct 11212 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 11260 >seq1475 Length=9838 Score = 120 bits (132), Expect = 4e-21 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 |||| | || ||||||| |||| ||||||||| || ||||||||||||| || ||| || Sbjct 1911 AAGAAGGTCACCCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACAGC 1852 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165 | || |||| |||||||| || || || |||||||||| || |||||||||| Sbjct 1851 ATGACCTCGGGCGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGACC 1792 Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225 | || ||| | || |||||| ||| | | |||||||| |||| ||| || ||| Sbjct 1791 AGATTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATCGAGCCCCTACAATCGCGATGC 1732 Query 1574226 GCCATTCTG 1574234 ||||| ||| Sbjct 1731 GCCATCCTG 1723 >seq75 Length=34143 Score = 93.3 bits (102), Expect = 5e-13 Identities = 257/386 (67%), Gaps = 16/386 (4%) Strand=Plus/Plus Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008 ||||| ||||| ||||| | ||||||||||| | | |||| || ||| | || Sbjct 32520 GGCGTCGACGCTTCGCGGACATACACCAACGACCTGTGGCAAGTGGTCGAGGTGTTTGGT 32579 Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCTCCTTTGACG 512066 |||||||| ||| | || ||||| || ||| | | ||| | | ||||||| Sbjct 32580 ATCGAGGCAGCCC-GTTCG-GCTCTGGTCAAGGAGTTGACCAACGTGCTGGCGTTTGACG 32637 Query 512067 GCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGAT 512126 | ||||||||||| | || ||| |||||||| || || |||| | | | |||| Sbjct 32638 GTTCCTACGTCAACCATCGTCACATTGCGCTGCTGACAGATGTCATGACGTACAGAGGAT 32697 Query 512127 CGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTC-CTGTCGCGG 512185 | | ||| || || || ||||| ||||||| || || ||| | | | ||| ||| Sbjct 32698 CCATCTCGGCTGTGACCCGACACGGTATCAACCGTGCTGA-CACTGGTGCTCTGATGCGT 32756 Query 512186 GCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGAC 512245 |||||||| ||||| ||||| ||| | | || || || || | || | || | | Sbjct 32757 TGTTCTTTCGAGGAGACGGTCGAGATCTTGCTCGAGGCTGCCGCGTCTG--GTGAGCTAG 32814 Query 512246 AAGATCACCGACG--GCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCG 512303 | || |||| | ||||| || || |||| |||||||||| |||||| || | Sbjct 32815 ATGACTGCCGAGGTATCTCGGAGAACG------TCATGCTGGGCCAGATGGCGCCAATGG 32868 Query 512304 GCACGGCCATCTCGGACGTGCTCGTG 512329 |||||| | || || |||||| || Sbjct 32869 GCACGGGTAACTTTGATGTGCTCCTG 32894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105605246945364