Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq398 125 1e-23 >seq398 Length=19136 Score = 125 bits (138), Expect = 1e-23 Identities = 629/988 (64%), Gaps = 32/988 (3%) Strand=Plus/Minus Query 69267 CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTA 69325 ||| || | ||| || || || || || || ||||||| || ||| || | || | Sbjct 14535 CAGGGCCAGAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGGGC-GCAGTACTCGATAA 14477 Query 69326 TCTCTGTACATAGATTA---CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTT 69382 |||| || || ||||| |||| ||| || ||||| || | ||| || ||||| Sbjct 14476 TCTCGGTGCAGAGATTGGAGCTACG---GATGGTGCCCAGGTTCTTCTGGTTGCTCTTGC 14420 Query 69383 TGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAA 69442 ||| ||| ||||||||| || || || || | || || || |||| | |||| | Sbjct 14419 GGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGA 14360 Query 69443 TAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTTTTTCAT 69499 | | | ||| | | || || || ||||||| || ||| | | || |||| Sbjct 14359 TGGCATACCAGAGCTTCTGGGCCTTCAT---GGTCTTGCGACCCTTGCCCGCCTTCTCAT 14303 Query 69500 ATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAA-CA-TCATCCAATCCAGGACAT 69555 | | | ||| | |||| ||||| || ||| ||| | || || ||| || || || Sbjct 14302 ACTTTTCGTAAAGAGCC--TCGAACTC--CTCGCCATAGCAGTCGGCCAGACCGGGGCAC 14247 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 || || |||||||| | | ||| || | | | || || || ||||| || |||||| Sbjct 14246 TCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCG 14187 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 |||||||| ||||| | || || || | || | || || || || || || Sbjct 14186 GGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 14127 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 || || || ||||| | | ||| | ||||| || || || || || || | | | Sbjct 14126 CGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCA 14067 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || ||||| || || || ||||| || | ||| | ||||||||| || |||| | ||| Sbjct 14066 CCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGC 14007 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGA 69855 || ||| | | ||| || || |||| || || |||| || ||| || | || || Sbjct 14006 ATGGGAGTGACACCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGG 13947 Query 69856 ATATTACTAATAGAT-AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 || | | | | || || || || || ||||| || ||||| | ||||| || Sbjct 13946 AT-TCGGTGGACGTTCAGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTT 13888 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974 | || ||||| |||||||| ||||| || ||| |||| | | || || || || Sbjct 13887 GAGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATATCGACCAGGAAGCATGAGGA 13828 Query 69975 CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTT 70034 || ||| | || ||| || ||||| || | || || || || || ||||| | || Sbjct 13827 CAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTT 13768 Query 70035 TTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC----CCACTGATGAATTC 70090 || | || ||||| || || | | || ||||| || | |||| | Sbjct 13767 GCTCGACATGAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATG----C 13712 Query 70091 CTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCA 70150 | | | |||||||| | ||| ||||| || || || || | || || || || | Sbjct 13711 CGACAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGA 13652 Query 70151 ACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGT 70210 ||||| ||| || ||||| || || ||||| || | |||| ||||| | || | Sbjct 13651 GGAGGTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCAT 13592 Query 70211 AAATAATAACAGAATTTAGTTTATCCTT 70238 | | ||| | || | ||| | ||||| Sbjct 13591 AGACAATGGCCGAGTCTAGCTCCTCCTT 13564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686748303758880