Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06]
18,692 sequences; 49,007,756 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq1098 116 1e-20
seq398 102 3e-16
>seq1098
Length=11580
Score = 116 bits (128), Expect = 1e-20
Identities = 356/536 (66%), Gaps = 21/536 (4%)
Strand=Plus/Plus
Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408
|||||||||||||| |||||||| | ||| |||||| | || || || | | ||
Sbjct 9507 GAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGACGAG 9566
Query 443409 CGCGATTTCTTCAAATGC---ATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465
| | |||||| | | ||| | |||||||| || | ||||| ||||||
Sbjct 9567 C---AGTTCTTCGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAAC 9623
Query 443466 GAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTAC 443525
||||| || || ||| ||| || ||| | | |||||||||| | |||||||
Sbjct 9624 GAGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTAC 9683
Query 443526 GCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GAC 443584
| ||||| | ||||||||||| ||| ||||| |||| || | | ||| |||
Sbjct 9684 GGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC--TC-GCTCCTCATTGAC 9740
Query 443585 AC-TAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCAT---GACCACG 443639
|| || || || || | || || || | ||| || || ||| |||||
Sbjct 9741 ACCTACATC--AAGGAGCCTGCTCAACGAACCTACCTCTTCAACGC-CATTGAGACCATC 9797
Query 443640 CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC 443699
|| ||||| | ||| | |||||| | | ||| || | || || | ||| |
Sbjct 9798 CCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAG-GACAAGAACTCGTC 9856
Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
|| | |||| || ||||| ||||||| ||||| || | || || ||||| |||
Sbjct 9857 CTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTT 9916
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| ||||||||||||||| | || |||||||| || |||| || ||||||||| ||||
Sbjct 9917 T-GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACG 9975
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874
| || ||| ||| ||||||||| | || |||||| || || || ||| || ||
Sbjct 9976 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCC 10031
>seq398
Length=19136
Score = 102 bits (112), Expect = 3e-16
Identities = 203/294 (69%), Gaps = 20/294 (7%)
Strand=Plus/Plus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| | ||||| ||||||||| || || |||||||| || || ||| ||| ||
Sbjct 14002 CCCATGCTTCGTGTCTTCAACAACACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGA 14061
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095
|| || || || |||||||||| ||||| |||||||| || | |||| ||| ||
Sbjct 14062 CCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 14118
Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
|| ||| | | || ||||| |||||| | |||||||||| | | | |||
Sbjct 14119 GAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTGTTCCTGGCTC 14176
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGAC-----CTGGAGCCT 255210
||||| |||||| || ||| | ||||| ||||| || || ||||| |||
Sbjct 14177 TCTGGATTCCCGATCTCTTCATG--AAGCGTGT--CGAGAAGA-ACGGTGACTGGACCCT 14231
Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264
||||||||||||| | |||||||| | ||||| | || || ||||| ||
Sbjct 14232 CATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGA 14285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1587955607425940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |