Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq637 161 3e-34 seq1492 141 3e-28 seq4643 87.8 5e-12 >seq637 Length=14615 Score = 161 bits (178), Expect = 3e-34 Identities = 443/673 (66%), Gaps = 8/673 (1%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || || | ||| | || ||||| Sbjct 12490 GACATCATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 12549 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || || | || || || | || || Sbjct 12550 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 12609 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || ||||| || || ||| | | || | ||| || | || Sbjct 12610 GTCTTCGACGCCAAGCGCCTGATCGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAC 12669 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | | | || | ||| |||| || || | || |||||| Sbjct 12670 ATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCCGTCATCGAGGTT 12726 Query 349502 GAATATAAAGGTGA--ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 || | || || || |||| | | || ||||| || || || || ||||| | Sbjct 12727 GAGTTCAAGGGCGAGAACAAGACC--TTCACCCCCGAGGAGATCTCCTCCATGGTCCTCA 12784 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || ||| || | || || | || | || || || || | | ||||| | | Sbjct 12785 CCAAGATGCGAGAGACCGCCGAGTCCTACCTTGGCGAGACCGTCAACAACGCTGTCGTCA 12844 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 |||| || ||||| || || || ||||||| || || || ||||| ||| ||||| Sbjct 12845 CTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGCCTCATTG 12904 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | || ||||| |||| || || |||||||| ||||| || ||||| || || | Sbjct 12905 CTGGCCTCAACGTTCTCCGAATCATCAACGAACCCACCGCTGCCGCCATTGCCTACGGTC 12964 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | || || | || ||| || || |||| || || ||| | ||||||||||||| Sbjct 12965 TCGACAAGAAGATTGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGTACTT 13024 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 | ||||| || || || || |||| ||||| || || || || || | || || |||| Sbjct 13025 TCGATGTTTCGCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGTG 13084 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 | || || || ||||| || || || || || ||||||||| || |||||||| || | Sbjct 13085 ACACTCACCTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTTGTTAATGAGT 13144 Query 349920 TTAAGCGTCAAGC 349932 | || || ||||| Sbjct 13145 TCAAACG-CAAGC 13156 >seq1492 Length=9010 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| || || ||||| ||||| || || || || || || Sbjct 5057 CATACCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 4998 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| || || || || || || || |||||||| || || || |||||||| Sbjct 4997 GCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGG 4938 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || | ||| ||||| ||||| | || || | ||| Sbjct 4937 AGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTC 4878 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||||||||| || || || || || |||||||| Sbjct 4877 CACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4827 Score = 129 bits (142), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | |||||||||||||| || ||||| || || || || || Sbjct 5288 TTACTGACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTA 5229 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || || || ||||| || || || ||||||||||| || || ||||| || Sbjct 5228 GTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 5169 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || |||||||| || | || || || ||||| | ||| | Sbjct 5168 AGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA 5109 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||||| || || || || ||||| |||||||| Sbjct 5108 CTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 5055 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || ||||| || || || Sbjct 4829 CATACCACCACGGAGGCGGAGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTC 4770 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| ||||| || || || || || || || || ||||| ||||| Sbjct 4769 GGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGG 4710 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||| || || || | || || || || |||| || || | || Sbjct 4709 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTC 4650 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 4649 CACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGAC 4611 >seq4643 Length=2915 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||| || || || || || || Sbjct 901 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 842 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 841 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 782 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || | || || || || || | || || | || || Sbjct 781 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 722 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||||| || || || || || ||||| |||||||| Sbjct 721 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514891509829676