Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20cuneirostrum_20[genbank_20GCA_5F001680505.1_202016-07-06] 18,692 sequences; 49,007,756 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq398 262 4e-65 seq1552 152 6e-32 seq1098 104 3e-17 >seq398 Length=19136 Score = 262 bits (290), Expect = 4e-65 Identities = 502/733 (68%), Gaps = 30/733 (4%) Strand=Plus/Plus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | || Sbjct 13734 GCGTGTCCTGGAGACCTACAACCTCATGTCGAGC---AAGTTCTTCACCCATGCCTCCCC 13790 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 ||||| ||||| |||||||| || |||||| |||| ||||||||||| | || Sbjct 13791 CACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGATAT 13850 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 ||| || ||| || || || || || || || |||||| |||||| |||||||| Sbjct 13851 GAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAA 13910 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATC 53467 | | ||||||||||||| | || | |||| ||||||| | ||| | ||| Sbjct 13911 GATGGCGGGTGGTATCGGCCTGAACGTCCACCGAA--TCCGTGCCACTGGCTCTTACATC 13968 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | || | || || || ||||| || |||||||||||||| Sbjct 13969 GCTGGTACCAACGGTACCTCCAACGGTGTCACTCCCATGCTTCGTGTCTTCAACAACACT 14028 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 |||||||||||| |||||||||| ||||| || | || ||||||||||| ||| Sbjct 14029 GCCCGGTACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAG 14088 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||||| || | | ||||| || || ||||| ||| || || | || ||| Sbjct 14089 CCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAG 14148 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | ||| ||| |||||||| ||||| |||||||| || ||||||||| | || Sbjct 14149 GTCCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTC 14208 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766 |||||| ||| || ||| ||| ||||| || |||||||||||||| || | | || Sbjct 14209 GAGAAGAACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTG- 14267 Query 53767 CTACGGTGAGGAGT---------TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCG 53817 ||| || ||||||| || |||| | |||| || | | || | |||| || Sbjct 14268 CTATGGCGAGGAGTTCGAGGCTCTTTACGAAAAGTAT--GA-GAAGGCGGGCAAGGGTCG 14324 Query 53818 CTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGA 53877 | |||| | ||||| | || | ||| |||| |||||| || ||| || Sbjct 14325 C------AAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGA 14378 Query 53878 GACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||| || | || | |||| ||||||||| |||| ||||||||||||||||| Sbjct 14379 GACCGGCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAA 14438 Query 53938 CATCGGCGTCATC 53950 | | ||| |||| Sbjct 14439 CCTGGGCACCATC 14451 Score = 111 bits (122), Expect = 2e-19 Identities = 554/860 (64%), Gaps = 52/860 (6%) Strand=Plus/Plus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 |||||| | ||| | ||||| || || | ||||| ||| ||||||||| || | || Sbjct 14568 TGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGAACAGGATTAT 14627 Query 55156 CGACAAGAATTACTACCCG---ACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCC 55212 |||| ||| ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 14628 CGACGTGAACCACTACCCTGTTACGGAAGCT---CGCAACAGCAACATGCGACACCGACC 14684 Query 55213 CATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTC 55270 ||| | | ||||| ||||| | || || ||| | ||||| | |||| ||| Sbjct 14685 CATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCTTTC 14742 Query 55271 GACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGC 55329 || || ||||| || | ||| || | |||||| || | ||||||| ||| || Sbjct 14743 GAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATCTACCATGCTGC 14801 Query 55330 GCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389 ||| | ||| || ||||| | | ||||| ||||| || ||| | || Sbjct 14802 CCTCACTGCTTCGGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTC 14861 Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443 || || |||| ||||||||||||| | ||| | ||| ||||||| | Sbjct 14862 TCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTGAAGCCTTCTGACCTCTG 14921 Query 55444 G---TTTGACAAGTT---GAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCT 55497 | | || || | | |||| | || | | ||| | |||||| ||||| Sbjct 14922 GGACTGGGAGAACCTCCGGGAGCAGGTCAAGGA---GCACGGCATTCGCAACAGTCTGCT 14978 Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557 | || || ||||| || || || | |||||| |||||||||||||| ||||| Sbjct 14979 GCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAGTGCTTCGA 15038 Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617 ||| ||||| |||||||||||| |||||| ||| || || ||||| || | || Sbjct 15039 GCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGTTC--CAGG-TCGT 15095 Query 55618 CAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAG 55672 ||| | | || |||||||||| | || | |||| | | | || || Sbjct 15096 CAACCCCTGGCTGCTCAAGGACCTTGTTGACATGGGCCTGTGGT--CGGATGCCATGAAA 15153 Query 55673 A--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCGTC 55727 | || || |||| |||||| ||| ||||||| || | ||| | || Sbjct 15154 AACCGAATCATTGCCGAGAACGGT---TCCATCCAGAACATCCCCAACATCCCCGCCGAG 15210 Query 55728 -TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA---AGAGTCTGATTGACATG 55783 |||||| | ||| ||| || ||||||||| | ||| || ||| || | ||| Sbjct 15211 GTCAAGGCCCTCTACAAGACCGTCTGGGAGATTTCGCAGCGCCAG-GTCG--TTCAGATG 15267 Query 55784 AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAAT 55843 ||| || || ||||| | ||| || ||||||||||| || |||||| |||| || | Sbjct 15268 GCTGCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCCCTCAACATCCACATGAAGGAC 15327 Query 55844 CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 || | ||| |||| | | | ||||||||| ||| |||||| || || |||||| Sbjct 15328 CCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGCCTGAAGACG 15387 Query 55904 GGTATGTACTATCTGCGGAC 55923 || |||||||| ||||| || Sbjct 15388 GGCATGTACTACCTGCGAAC 15407 >seq1552 Length=8511 Score = 152 bits (168), Expect = 6e-32 Identities = 244/347 (70%), Gaps = 10/347 (3%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || ||||| || | ||||||| || || |||||| ||||| || || || | |||| Sbjct 4775 AGTCGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCG 4716 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | |||||| ||||| | | ||| | |||||| | ||||||||||| || |||| Sbjct 4715 AAGTTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGA 4656 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 || || || ||||| || ||||| ||||| || |||||||| || | ||| Sbjct 4655 CCGATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACA 4596 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| | |||||||| |||| |||| |||||| |||||| ||| || | Sbjct 4595 TAACCAGCCAATTCCACCACCTTCTTGTCCTTGAC--CAGGTTTCTCTTGAAGCAAGCGT 4538 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGA 117596 | | ||||||||||||| ||||| | |||||| || ||||||||| ||| | Sbjct 4537 AGAGAACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGC---A 4481 Query 117597 TGTCCTCAGC---GCTAAAGTTGGCCAAGTCCCGGTGGATGAAATCA 117640 ||| ||||| ||| ||| | | ||||||| |||||||||| Sbjct 4480 TGTTATCAGCCATGCTGAAGAGGATGAGCTCCCGGTTGATGAAATCA 4434 Score = 129 bits (142), Expect = 6e-25 Identities = 205/294 (70%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || || ||| | || || | ||||| |||||| |||||||| || || | || || Sbjct 4772 CGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCGAAG 4713 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||||| ||| ||||| |||||| | ||||| || ||||| |||| | Sbjct 4712 TTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGACCG 4653 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || ||| ||| |||||||||||||| || |||||||| || | | || Sbjct 4652 ATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACATAA 4593 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||||| ||||| | |||||| |||||| || ||||| | Sbjct 4592 CCAGCCAATTCCACCACCTTCTTGTCCTTGACCAGGTTTCTCTTGAAGCAAGCGTAGAGA 4533 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||||||||| || || || || |||| || ||| ||||| ||| || Sbjct 4532 ACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGCATG 4479 Score = 96.9 bits (106), Expect = 4e-15 Identities = 229/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 118003 GTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAG 118062 ||| | || ||| ||||||||||| ||| || ||||| ||| |||||||||||||| Sbjct 4023 GTTGATCAGGAGACCCTTGATATGACTACCATCGTGATCCTGATCAGTCATGATCATCAG 3964 Query 118063 GCGGCCGTACCGTAAATCTCTCAGGGAGT-TATAAACCTTACCATGTTGGAGCCCGAGGA 118121 ||||||| || || |||| | | | | || |||| || | || || |||| Sbjct 3963 ATGGCCGTATCG-AAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCTTCAGACCCAGGA 3905 Query 118122 TCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAA 118181 || || | ||| | ||||| || | || | ||| | | | |||| || || | Sbjct 3904 ACTGCTTGATGTTCTGGATTTCCTGGTTCTTGGTGATCTGGTCGACGCTGGCATCGCGGA 3845 Query 118182 CGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCA-CAACGCTC 118240 ||||| || |||||| || ||||| || || |||| | ||| || | | | |||| Sbjct 3844 CGTTGAGCATCTTACCACGGAGTGGGAAGACACCAATGTGGTCGGGGTCAAGGATGGCTC 3785 Query 118241 AAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCG 118300 || | || ||| || |||| || |||||||| || || | || ||||||||||| Sbjct 3784 -GTCCAGAAACAGCCAGACCCTTGGCGGAGTCACCTTCAGTCAGGATCAGAGTGCACTCA 3726 Query 118301 GTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341 || || ||||||| ||| | || || || ||||||| Sbjct 3725 TGGCCTCGGCGAGTACCTGCCAAGTTGGCCTCGACCAGCTT 3685 >seq1098 Length=11580 Score = 104 bits (114), Expect = 3e-17 Identities = 536/836 (64%), Gaps = 58/836 (7%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 10303 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 10244 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCC-ATGAGG 74579 ||||||| ||||| | || ||| | |||||| | | | | | | |||| Sbjct 10243 AAGTCGAAGGGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCGAGGGCGACGAGGAGG 10187 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | ||||||||| |||| | || | |||||||| || | Sbjct 10186 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCG 10127 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 || || || |||||||| | ||||| ||| | | | | ||| || | || | Sbjct 10126 CAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATGT 10069 Query 74698 TGTGAATGTCTT------TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 || ||| | | ||| | ||| ||| ||||| |||| || | || | Sbjct 10068 CCTGGATGACCTGCTTGCTGGCACGGCCCTTG------AGGTGGGAGTGGAGGAGGCATG 10015 Query 74751 GCAAACTCCTGATGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 |||| || | || || || || || | || | || || ||||| | |||| Sbjct 10014 -CAAAGTC--GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGC 9958 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 ||||||| || ||||||||||| | ||| ||||||| |||| ||| |||||||||| Sbjct 9957 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGA 9898 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCATCGGAAGTC 74924 | || ||||| ||||||||||| || || || || || | || | | ||| Sbjct 9897 TACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTT-----GTC 9843 Query 74925 ----ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGAT 74977 ||||| || || ||||| || || ||| | | ||| |||| || || || Sbjct 9842 CTGGATCCA--TCGGATGGCCCAGTCGGC-CTTCTTGCGGATGCAGGGGATGGTCTCAAT 9786 Query 74978 CGCTTGGAAGAGGCTTGCCTTC--TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035 || | ||||||| | ||| | | || ||||||| | ||||||| | || Sbjct 9785 GGCGTTGAAGAGG--TAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGC 9728 Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095 ||||| ||||| || || || ||| | | |||| | ||||||| | || ||| Sbjct 9727 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCC 9668 Query 75096 TCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGT 75153 || | ||||| || | || |||| || | | | ||||| |||||||||||| Sbjct 9667 TCGGGGATCTGGACCTCGCCGCTGAATCGCTC--GACAAGGTTCTCGTTGACGATGCCGT 9610 Query 75154 CCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GA 75210 | ||||| ||||| || || || | || ||| |||| ||| |||| | Sbjct 9609 CAGAGGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGC 9550 Query 75211 GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | |||| ||| || | || ||| | | ||||||||||||| | ||||||||| Sbjct 9549 GGTTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAA 9494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547088142981600