Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq179 230 3e-55 >seq179 Length=1646338 Score = 230 bits (254), Expect = 3e-55 Identities = 566/845 (67%), Gaps = 25/845 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | || || Sbjct 1576377 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 1576318 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | || |||||| ||||| || | || Sbjct 1576317 TCTAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 1576258 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | || ||||| || | ||| ||||| || |||||||| || || || || || Sbjct 1576257 CACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAG-CG 1576199 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| ||| ||||| ||||| ||||||| Sbjct 1576198 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGTTTCTACGGCTTCCAGATCATGA 1576140 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| || | ||||| || || |||| || || || || | Sbjct 1576139 TGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTATATCAAGGAGCCCG 1576080 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | || || ||||| || || || | || | || || || |||||| Sbjct 1576079 CCCAGCGAACCTAC-CTTTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCT 1576021 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | ||||| | ||| | | || || || Sbjct 1576020 GACTGGGCCATCCGATGGATCCAAGATAAGGACTCTTCCTTTGCCCAACGCCTCGTTGCT 1575961 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| ||||| ||||| |||||||| ||| || || |||| || ||||||||| Sbjct 1575960 TTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATTTTCTGGCTCAAG 1575901 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||||| || ||||| | ||||||| | || ||||| |||||||| Sbjct 1575900 AAGCGTGGTCTCATGCCTGGTCTGACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGT 1575841 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| |||||||||| || || | ||| | | | || || | || Sbjct 1575840 CTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTAAAGGGCCGTGCC 1575790 Query 125616 AGCGATGAAAAGGTCATCA--ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 ||| | | | | | ||| | || | || |||||||| | || ||||| ||||| | Sbjct 1575789 AGCAAGCAGATGAT--TCAAGATATCATCACTGATGCCGTCACCATTGAACAGGAGTTCC 1575732 Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACA 125733 | || || | || || | | | |||||||||| | || ||| |||||| Sbjct 1575731 TCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACA 1575672 Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACG 125790 | ||||| || || |||||||| || || ||||| || ||| | ||||| | Sbjct 1575671 TTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAAGGTCTACAAGG 1575615 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 ||| || ||||| || |||||| | ||| || || | || ||||||||||| |||| Sbjct 1575614 CCACCAACCCCTTCGACTTCATGGAAAACATCTCCCTTGGCGGCAAGACCAACTTCTTCG 1575555 Query 125851 AGAAG 125855 ||||| Sbjct 1575554 AGAAG 1575550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057467774120