Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq145 114 1e-20 seq27 114 1e-20 seq80 82.4 6e-11 >seq145 Length=1022755 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 404275 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 404334 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || || || Sbjct 404335 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 404394 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | |||||| ||||||| | ||| ||| Sbjct 404395 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 404454 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 404455 AACATCCAGAAGGAGTCCACC 404475 >seq27 Length=3261259 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 1154188 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1154129 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || || |||||||||||||| || ||||| || Sbjct 1154128 GATACCATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 1154069 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || |||||||| ||| | ||||| |||||| |||| ||||| ||| Sbjct 1154068 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTATAAC 1154009 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| | ||| | ||| | || | || || ||| Sbjct 1154008 ATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGGT 1153961 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | ||||| ||||| || | || Sbjct 1153678 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 1153619 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || || ||||||||||||||||| || |||||| Sbjct 1153618 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAA 1153559 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| || | |||||| ||| || | ||||| |||||| Sbjct 1153558 CAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 1153499 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 1153498 ATCCAGAAGGAATCTAC 1153482 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || |||||||||| || || | | Sbjct 1153450 ATGCAGATTTTCGTGAAGACTCTGACTGGAAAGACCATCACTCTTGAGGTTGAGTCTAGT 1153391 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || ||||||||||| || || ||||| Sbjct 1153390 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 1153331 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||||| || ||| |||||| | ||| |||||| Sbjct 1153330 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 1153271 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | ||| | ||| | ||||| || Sbjct 1153270 ATCCAGAAGGAGTCAACTCTCCACCTCGTTCTCCGACTTCGCGGTGG 1153224 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||| || || || | |||||||| | ||| || | || Sbjct 1153882 ACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGATACCATCGACAATGTTAAGTCG 1153823 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || || || ||||| || ||||| || || Sbjct 1153822 AAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTGATTTTTGCTGGAAAG 1153763 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || ||| ||| | |||| |||||||| || || ||||| ||| | ||| Sbjct 1153762 CAACTGGAAGACGGCCGAACCCTTGCCGACTACAACATCCAGAAGGAATCTACCCTTCAT 1153703 >seq80 Length=892031 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 766090 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 766031 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || ||||| || || Sbjct 766030 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 765971 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || || || || | |||||| ||| || ||||||| |||||||| || || Sbjct 765970 GATCTTCGCTGGTAAGCAACTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 765911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727043413655