Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq179 122 2e-22 seq82 107 4e-18 seq27 93.3 9e-14 seq162 86.0 1e-11 >seq179 Length=1646338 Score = 122 bits (134), Expect = 2e-22 Identities = 294/443 (66%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| |||||||||||||||||||| ||| Sbjct 1575554 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTTTCCATGAAGTCGAAGGGGTTGGTG 1575613 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 1575614 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 1575673 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 1575674 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 1575733 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| ||| ||| || || || | || | | ||| ||| | | | | Sbjct 1575734 AACTCCTGTTCAATGGTGACGGCATCAGTGATGATATCTTGAATCATCTGCTTGCTGGCA 1575793 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| | |||| | ||| ||||||||||| Sbjct 1575794 CGGC----CCTTTAGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTCGTC 1575849 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| |||||| || | ||| |||||||| | ||||| ||| ||||||| Sbjct 1575850 ACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCA 1575909 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 ||| || | | |||| ||| ||| | | |||||| || | | ||||| || Sbjct 1575910 GAAAATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAG 1575969 Query 251979 GCGCTCAGCAAACGACTTGTCCT 252001 ||| | ||||| || ||||| Sbjct 1575970 GCGTTGGGCAAAGGAAGAGTCCT 1575992 >seq82 Length=639665 Score = 107 bits (118), Expect = 4e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 91874 GGTGAGGATCTTTGCAACTGTACATTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 91815 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| |||||||||| | || |||||||| ||||||||| || | Sbjct 91814 CAGACTCATCTCCGTCTCAAGCGTGGTCAGCGTTATGGTCTTTGCGGTCCCAACGGTTCC 91755 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 91754 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 91696 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 91695 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 91650 Score = 93.3 bits (102), Expect = 9e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || || | ||||| || ||||| ||||| || |||||||| || ||| Sbjct 91067 TCTCTGGGCTCCCGTATCGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 91008 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 91007 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 90948 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| |||||||| |||| |||| Sbjct 90947 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCACCTTGACAAGACT 90888 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | || || || ||||| | | || | ||| |||||| ||| | |||| || Sbjct 90887 CCTTCCGAGTATATCCAATGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 90829 >seq27 Length=3261259 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 2260844 AGTTGGTTCCCTTTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 2260903 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||||||||| || ||||| || || || || || ||||| | || ||||| | || Sbjct 2260904 GCGTGCCGACGTTCTACTTCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 2260963 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 2260964 TTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 2261021 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| || ||||| || Sbjct 2261022 GACTCCGGATTCCTGGA 2261038 >seq162 Length=1634208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/270 (68%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||| ||||||||||| | | | || || | | || Sbjct 856702 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGGACGACCTGGCG-CTGAG 856760 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||||||||| ||||| |||| ||||||||||| | | | ||| || |||| Sbjct 856761 AGATCTCCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCT 856820 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292 | || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 856821 GAATGGATCCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 856879 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || || | | ||||||||| ||||||||||||||||| || Sbjct 856880 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGG 856939 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCG 293382 || ||| || || || ||| ||| ||| Sbjct 856940 CGTTGGTAGATATTGGAGGTGTAGGGCTCG 856969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834337367267