Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq179 354 2e-92 seq162 304 2e-77 >seq179 Length=1646338 Score = 354 bits (392), Expect = 2e-92 Identities = 593/845 (70%), Gaps = 18/845 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || |||||||||||||| | ||||| Sbjct 1576368 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTCTCTAAGGAT 1576309 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || ||| ||| | || |||| ||| || |||| | Sbjct 1576308 CTCCACGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCTCACATCC 1576251 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 1576250 TTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTG 1576191 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || || ||||||||||||||||| || |||||| Sbjct 1576190 GCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGATGGAGAACA 1576131 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||| || || || |||| || ||| ||| |||| | |||| | Sbjct 1576130 TTCACTCCGAGACCTACTCCCTCCTCATCGACACCTATATCAAGGAGCCCGCCCAGCGAA 1576071 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 1576070 CCTACCTTTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 1576011 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| | | ||| | | || | | | | || || || || | |||| Sbjct 1576010 TCCGATGGATCCAAGATAAGGACTCTTCCTTTGCCCAACGCCTCGTTGCTTTCGCTGCCG 1575951 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTG 42782 | ||||| ||||||||| || |||||||||||||| |||||||||||| || ||| Sbjct 1575950 TTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTC 1575891 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || || |||||||| ||||| |||||| | |||||||| || || | Sbjct 1575890 TC-ATGCCTGGTCTGACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 1575832 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCT-CAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| ||||| ||| | ||| | ||| || | | Sbjct 1575831 GACTTTGCCTGCCTCCTCCACTC---TCACCTAAAGGGCCGTGCCAGC-AAGCAGATGAT 1575776 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | |||||||| || ||||| || || ||||||||||||| || | || || Sbjct 1575775 TCAAGATATCATCACTGATGCCGTCACCATTGAACAGGAGTTCCTCACTGAGGCTCTTCC 1575716 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||| | Sbjct 1575715 CTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 1575657 Query 43021 ACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 | | ||||| ||| | ||| || | ||||||| | | |||||||||| Sbjct 1575656 ATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGAC 1575598 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || ||||| |||||||| | | |||||||||||||| ||||||||||| || |||||| Sbjct 1575597 TTCATGGAAAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 1575538 Query 43140 TACCA 43144 ||||| Sbjct 1575537 TACCA 1575533 >seq162 Length=1634208 Score = 304 bits (336), Expect = 2e-77 Identities = 884/1343 (66%), Gaps = 41/1343 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| ||| | || || Sbjct 856906 GTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGG 856965 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 856966 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 857025 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 || |||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 857026 GAGTAGACTGTTGCGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 857076 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 857077 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGAATACCCTCAG 857135 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | ||||| |||| | |||| | ||||||||| || || ||||||| || | Sbjct 857136 AGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCTTCCTTAGCCAGCTGCACGGAGG 857195 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 ||| || || |||| || |||||||| || ||| ||| || | || || |||| | Sbjct 857196 CAGTC-AGCGCAGCGTGATAAATGGTCTCAAAAATCTGCTTATTGAGCTCACGAGCCTCG 857254 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | | |||||| |||| || | ||| | ||||| || ||||| || || | Sbjct 857255 GGGGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGACCCTGAACACCAAGA 857314 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 857315 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCAC 857373 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 ||||| | |||||| |||||||| | | || | ||| ||| | | |||| || | Sbjct 857374 ATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAGCTTCTTGA 857432 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | | | || ||| | || ||| | | | || | || Sbjct 857433 AGTCGTA---GCAAGCCTCATCGTAGTTGATGA-----AGGAGGGCAGAGATAGAGA--- 857481 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| |||||||||||||| ||||| || | | ||||| || ||| || ||||| | Sbjct 857482 -GGCAAGGTTGCAGACGGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGCAAA 857540 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 | || || |||||| || |||| || || || |||| ||||||||| || | Sbjct 857541 GATTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAGGCATCTT 857600 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || |||||||| |||||| | || | | || ||| || | Sbjct 857601 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCT 857660 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| |||| ||||| |||||||| | |||||| |||||| |||| Sbjct 857661 TCTGAGCCTTGATCGTCTTGCGACCCTTGCCCGCCTTCTCGTACTTTTCGTACAGAGCCT 857720 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| || || ||| | ||||| |||||| |||||||| || ||| Sbjct 857721 CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATAAGTGTCC 857780 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| | | || | || ||| || || || |||||||| ||||| |||| | Sbjct 857781 AGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCAAGGAAAA 857840 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| ||| || |||||| | || || | || || |||| Sbjct 857841 GGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGA 857900 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| || | || ||||| ||||||||||| |||| Sbjct 857901 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 857960 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | ||| | ||||| |||||||| || || |||| || | ||||| Sbjct 857961 GGTCGA-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACGACACCGTTC 858016 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || |||||||| || |||||| | ||| | | | | | | ||| || || Sbjct 858017 GATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACAT--TCA 858074 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||| ||| |||||| || || || | Sbjct 858075 GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTC 858134 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| Sbjct 858135 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGG 858194 Query 245400 TGCACGAGTTGAACAGAGTGGGG 245422 ||| | ||||| || |||||| Sbjct 858195 TGCCGGCATTGAAGAGCGTGGGG 858217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336992607120