Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq162 203 4e-47 seq179 141 1e-28 seq187 82.4 9e-11 >seq162 Length=1634208 Score = 203 bits (224), Expect = 4e-47 Identities = 1127/1786 (63%), Gaps = 47/1786 (3%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| ||||| ||||||| || | | |||||| || || ||||| || || Sbjct 858325 CCCACAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGT 858266 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| || |||||| | | |||| || || | || || ||||| Sbjct 858265 CTTGGAGACATACAACCTGATGTCAAGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTT 858206 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || || || || |||||| |||| ||| ||| | ||| | ||||| || Sbjct 858205 CAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGA 858146 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| ||||||| |||||| ||||| ||| |||||| Sbjct 858145 CAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 858086 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 |||||| || || | | || | || | || | | ||| || | | ||||| Sbjct 858085 TGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACT--GGCTCATACATCGCCGGTACC 858028 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| ||| | ||| | |||| |||||||| || || ||| ||| || || ||| Sbjct 858027 AACGGTACATCGAACGGTGTCGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGGTAT 857968 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||| | ||| ||| | | || || | || |||| || ||||| ||| Sbjct 857967 GTCGACCAGGGTGGCAACAAGCGACCC---GGTGCTTTTGCCATCTACCTCGAGCCTTGG 857911 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| || Sbjct 857910 CACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGT 857851 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || || ||| || || ||||| || ||||| || |||||| | ||||| || Sbjct 857850 GCCCGTGACCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAG 857791 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || | ||| | || | || || || || || || ||| |||| | || Sbjct 857790 AACGGTGACTGGACACTTATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGA 857731 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-----CGA 112257 |||||||| || || || ||| |||||||||| ||| ||||| | | || Sbjct 857730 GAGGAGTTCGAGGCTCTGTACGAAAAGTACGAG-----AAGGCGGGCAAGGGTCGCAAGA 857676 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 || | | || | || | | ||| | || ||||| || | || || ||||| || | Sbjct 857675 CGAT-CAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAAC 857617 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 |||| ||||| |||||||| ||||| |||| |||||||| |||||||| | ||| Sbjct 857616 CCATTCATGCTCTACAAAGATGCCTGCAACCGCAAGAGTAACCAAAAGAACCTCGGTACC 857557 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || ||||| || || || ||||| | || | | | || ||| || Sbjct 857556 ATCCGAAGCTCCAATCTTTGCACTGAAATTATCGAGTACTGTGCCCCTGACGAGGTCGCC 857497 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || || ||||| || || | |||| ||| | | || || | || || Sbjct 857496 GTCTGCAACCTTGCCTCTCTATCTCTGCCCTCCTTCAT-----CAACTACGATGAGGCTT 857442 Query 112497 -----GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 || | | || || ||| | || | | ||| | ||||| |||| Sbjct 857441 GCTACGACTTCAAGAAGCTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGA 857382 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 | || ||| || ||||| || || ||||| || ||| ||| | ||||| | Sbjct 857381 TCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGAC 857322 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 112670 | |||||||| ||||| || ||||| || |||| ||| || || || ||| | || Sbjct 857321 CCATTGGTCTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTC 857263 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || ||| ||| || || ||||| || || |||||||| || |||||||| || Sbjct 857262 GAGTCCCCCGAGGCTCGTGAGCTCAATAAGCAGATTTTTGAGACCATTTATCACGCTGCG 857203 Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 || || | || |||| ||| || ||||| || ||||| ||||||| Sbjct 857202 CTGACTGCCTCCGTGCAGCTGGCTAAGGAAGAGGGTCCCTACTCCACCTTCAAGGGTTCC 857143 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 112850 || || || | || | || || || || |||||| | | || || | || Sbjct 857142 CCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGG 857083 Query 112851 GACTGGGACGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 |||||||| ||| || || | | | ||||| | || | || |||||||| | Sbjct 857082 GACTGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGCAACAGTCTACTCC 857025 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || ||||| || ||| ||| | || || |||| || || || ||||| || | Sbjct 857024 TTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGC 856965 Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028 ||||||| | || ||||| | | | ||||| || ||||| | |||||||| Sbjct 856964 CCTACACCTCCAATATCTACCAACGCCGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACC 856905 Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 113088 || | | ||||| || || ||||| |||||| | | ||||||| | | || Sbjct 856904 CCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCA 856845 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | | | | ||| |||||||| || ||| | || || | || | ||| Sbjct 856844 TCATTGCTGAGAATGGATCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTC 856785 Query 113149 TGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTG 113208 |||| || |||||||| ||| | | ||| | | ||||| || ||||| | Sbjct 856784 TGTATAAGACTGTTTGGGAGATCTCTCAGCGCCAGGTCGTCCAGATGGCTGCTGATCGAG 856725 Query 113209 GTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTC 113266 || ||||||||||| |||| ||| |||| | |||| | || |||||| Sbjct 856724 GTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATGGG 856667 Query 113267 CAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATT 113325 |||| || | |||||| | | || | |||||| || ||||| || || ||||| | Sbjct 856666 CAAGATCACCAGCATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACT 856608 Query 113326 ACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 113371 |||| || | |||| || || |||||||||| | |||| Sbjct 856607 ACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 856562 >seq179 Length=1646338 Score = 141 bits (156), Expect = 1e-28 Identities = 206/286 (72%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA-GCCATCCA 102106 ||||| |||| ||||| ||||| || || ||| | | ||| || ||||| | Sbjct 1576107 CTCATCGACACCTATATCAAGGAGCCCGCCCAGC-GAACCTACCTTTTCAACGCCATTGA 1576049 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 || |||| || || | |||||| || || ||||| || ||| | | | || | Sbjct 1576048 GACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAAGATAAGGA 1575989 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | ||||||||| | || ||| | || || || |||||||||||||||||| || Sbjct 1575988 CTC-TTCCTTTGCCCAACGCCTCGTTGCTTTCGCTGCCGTTGAGGGTATCTTCTTCAGTG 1575930 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || ||||| | | |||| |||||||||||||| ||||||||||| ||||| ||||| Sbjct 1575929 GTGCCTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCT 1575870 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | |||||||| ||||||||||||||||| || ||| || ||||| Sbjct 1575869 CTAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGC 1575824 >seq187 Length=976330 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 163548 ATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGCGG 163607 |||| || |||| || ||||| ||||||||| || || || | || || | Sbjct 387048 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 386989 Query 163608 GTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 163667 |||| || ||| |||| ||| ||| | ||||| ||| | |||||||| ||| || Sbjct 386988 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 386929 Query 163668 AAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAG 163717 ||||||||||| ||| ||| || ||||| || ||||||||||| ||| Sbjct 386928 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAG 386879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740949014640