Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq162 187 3e-42 seq179 104 3e-17 seq187 87.8 2e-12 >seq162 Length=1634208 Score = 187 bits (206), Expect = 3e-42 Identities = 538/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Plus Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | |||||| || || | ||||| || || || || | ||||||||||| Sbjct 857518 GTACTCGATAATTTCAGTGCAAAGATTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 857577 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 |||||| |||||| ||||| |||||||||||| | || | || ||||| ||||| | Sbjct 857578 ACTCTTGCGGTTGCAGGCATCTTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 857637 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCT 106682 || ||||| || | ||| | | || | | || | || | ||| | || | ||| Sbjct 857638 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG----ATCGTCTTGCGACCCTTGCCCG 857693 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 || |||||||||| ||| || || || |||||||| || ||||| ||| || | Sbjct 857694 CCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAG 857753 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || || || || | ||| | ||| | ||| || ||||| |||||||| |||| Sbjct 857754 GGCACTCGTTGGGGCACATAAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAA 857813 Query 106803 GGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTG 106860 | || || ||||| |||| | | ||| || || | ||| || |||| || | ||| || Sbjct 857814 GATCAGGGATCCAAAGGGCAAGGAAA-AGGTCACGGGCACGGA-CCTCCTCCTTACCGTG 857871 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 ||| || | ||||||||||| | || ||| | |||||| ||||| || |||| || Sbjct 857872 GTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGC 857931 Query 106921 GATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 | || || ||| ||| | || | ||||| || || ||| ||| || || Sbjct 857932 AAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGAC 857991 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTA 107035 |||||||| |||| | ||| | ||| ||| || || || ||| || ||| | Sbjct 857992 ACGAAGCATAGGAACGACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAG--CCA 858049 Query 107036 TTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCA 107095 | || | | | || | | || |||||||| |||||| ||| ||||| ||| Sbjct 858050 GTAGCACGGATACGGTGCACATTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 858109 Query 107096 CACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAG 107155 || | | ||||| | ||||| || | || ||| ||||| | | | | |||| Sbjct 858110 CAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAG 858169 Query 107156 CAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG----TTGCGTG 107211 ||| |||| || || || || || ||||||||||| || || | |||||| Sbjct 858170 CAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTG 858229 Query 107212 AATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 107271 || |||| | | | |||||| || ||||||||||||||| || || || || || Sbjct 858230 AA-GAACTTGCTT---GACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACC 858285 Query 107272 GTGGATGCCGATGGCCACACGCATAAACATGT 107303 ||| || | | ||||||||| | ||||| Sbjct 858286 CCAGATACCAACAGACACACGCATGATCATGT 858317 >seq179 Length=1646338 Score = 104 bits (114), Expect = 3e-17 Identities = 299/457 (65%), Gaps = 16/457 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| || ||||| ||||||||||| Sbjct 1575536 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTTTCCATG 1575595 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100 ||||| || || || | || || | | | | || |||| |||| Sbjct 1575596 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1575650 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 ||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 1575651 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 1575710 Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 ||| || || || || || |||| | | ||||| || || || | | ||| Sbjct 1575711 CACAGGGAAGAGCCTCAGTGAGGAACTCCTGTTCAATGGTGACGGCATCAGTGATGATAT 1575770 Query 117221 CGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 | || || | | | ||| | | || | || | || ||| || ||||| Sbjct 1575771 CTTGAATCATCTGCTTGCTGGCACGGCCCTTTAGGTGAGAGTGGAGGAGG--CA-GGCAA 1575827 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| |||||||| || || || || || || || |||||| || || |||| Sbjct 1575828 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCA 1575887 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||| | ||| |||| | | ||| | || |||||||||||||| Sbjct 1575888 TGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 1575947 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 | || || || |||| ||||| | ||| ||||| Sbjct 1575948 CAACGGCAGCGAAAGCAACGAGGCGTTGGGCAAAGGA 1575984 >seq187 Length=976330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 387048 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 386989 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || ||| | ||||| ||| | |||||||| || || Sbjct 386988 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 386929 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 386928 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 386876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979420919880