Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq27 89.7 3e-13 >seq27 Length=3261259 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||| || || || | || | || || ||||| || ||||| || Sbjct 1153998 TCCTTCTGAATGTTATAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 1154057 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||||||||||| |||||| || || || Sbjct 1154058 ATCAAGCGTTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTAAC--AT 1154115 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | |||||| |||| ||| ||||| || || || || ||||| Sbjct 1154116 --TGTCGATGGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTT 1154173 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 1154174 GACGAAGATCTGCAT 1154188 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | |||| | || |||| |||| ||| || || || || Sbjct 1153260 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTACCAGCGAA 1153318 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | |||||||| || |||||| || ||| Sbjct 1153319 GATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTGCTCTTCACGTT 1153378 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| | |||||| || | || ||||| ||||| || ||||||||||| Sbjct 1153379 GTCGATAGTGTCACTAGACTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTCAC 1153438 Query 34970 AAAGATCTGCATA 34982 || ||||||||| Sbjct 1153439 GAAAATCTGCATA 1153451 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| ||||| ||||| ||||| ||||| |||| |||| || Sbjct 1153470 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCA 1153529 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || ||||| || || || | || | ||||||||||| Sbjct 1153530 AGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGGAGGAATACCCTCCTTGTCCTGG 1153589 Query 34893 ATCTT-CTGTT----TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| || || | | ||| ||||| | | ||| || || | || |||| Sbjct 1153590 ATCTTGCTCTTCACATTATCAATGGTATCGGAT-----GACTCGACTTCCAGAGTAATGG 1153644 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || ||||| || ||||| |||||| Sbjct 1153645 TCTTTCCAGTAAGGGTCTTGACGAAGATTTGCATA 1153679 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/185 (70%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | |||| |||| | || ||||| || ||||| ||||| Sbjct 1153715 TTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCCAGTTGCTTTCCAGCAAA 1153774 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906 || || || |||||||| | || | ||||||||||| |||||| || || Sbjct 1153775 AATCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATT 1153834 Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| ||||| || | ||| || |||| || ||||| || || ||||| ||| Sbjct 1153835 GTCGATGGTATCG---GAC--GACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 1153889 Query 34965 TTCAC 34969 || || Sbjct 1153890 TTGAC 1153894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632860139736