Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq85 178 1e-38 >seq85 Length=1202620 Score = 178 bits (196), Expect = 1e-38 Identities = 707/1102 (64%), Gaps = 17/1102 (2%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| ||| || ||||| ||| || || || |||| | || || | Sbjct 1183019 ATTGGTAATGACAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACGGCGGAGACGTTCAT 1182960 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||||| |||||||| | ||| || ||||| |||||||| || || || | | ||||| Sbjct 1182959 GATACCGTTGGCATCAAGATCGAAGGTGACCTCAATTTGGGGAACACCACGGGGGGCAGG 1182900 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| || | | || | |||| || || || || ||| || || || Sbjct 1182899 AGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGTTGACGCTC 1182840 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||||| | | |||||| ||| ||| || || ||||| | || | || || Sbjct 1182839 ACCCTCGTAGACCTGGATAAGAACACCAGGCTGGTTGTCTGAGAAGGTGGAGAAGACCTC 1182780 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||| || || ||| || || ||||| | |||| |||||||| ||||||||||| Sbjct 1182779 GGACTTCTTGGTAGGGATGGTGGTGTTGCGGGGGATAAGCTTGGTCATCATACCACCAGC 1182720 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 || || | ||| ||||| ||||| | |||||| | || | || | || | | || Sbjct 1182719 GGTCTCGATACCGAGAGAGAGAGGGGCGACATCGAGAAGCAGGATCTCGTTGGTGGCCTT 1182660 Query 281738 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | | || | ||| ||||| || || || | |||||||| || |||||||| || Sbjct 1182659 GCTGGAGGTGTCACCTGAGAGAATCGCGGCCTGGACGGCAGCACCGTAGGCAACAGCCTC 1182600 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 281856 ||| || || | | | || | | || || ||||| ||| | | || | ||| Sbjct 1182599 ATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAATCGGTGATGAGCT-TCT 1182541 Query 281857 -TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 || || ||||||| ||||| || || | ||||| || || || | || || | Sbjct 1182540 GGACACGGGGGATACGAGTAGATCCACCGACGAGGACAATCTCGTGGACGAGGGACTTGT 1182481 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975 | | || | || | || || ||||| | | | | || || | || Sbjct 1182480 CGATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATAGTGGATCGGAAAAGATCCT 1182421 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 282033 || || || ||||| ||| | || || || | || || ||||| || ||||| Sbjct 1182420 GGCAGAGCTCCTCGAAACGAGCACGGGT--GATGGAGGTGTAGAAGTCAATACCCTCGAA 1182363 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 | ||| |||| || |||| || |||| || ||||| |||| || || ||||| || Sbjct 1182362 GAGAGAGTCAATCTCGATCGAGGTCTGAGCAGAGGAAGAAAGTGTTCGCTTGGCACGCTC 1182303 Query 282094 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGAT--TCAAATCTGTTTTAT 282149 || || || | || | ||| | ||| || || ||| | ||||||| | || | Sbjct 1182302 GCAAGCAGTTCGGAGACGTCGCAGGGC----GCGGACGTTGGTGCTCAAATCCTTCTTGT 1182247 Query 282150 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 282209 ||||||||||| || | || | | || ||||| || || || || ||||| | Sbjct 1182246 GCTTTCTCTTGAATTCATTTACGAAGTGGTTGACCAGACGGTTGTCGAAGTCCTCACCAC 1182187 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | ||| | || | |||| | || | ||| | || || |||| | | | Sbjct 1182186 CCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTAAGGA 1182127 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 282329 ||| ||||| ||| |||||||| | ||| || || || || || || || Sbjct 1182126 GAGACACATCGAAGGTACCACCACCAAGATCGAAGATCAGGACGTTGCGCTCGCCCTCAA 1182067 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 || || |||||||| || |||| || |||||||| || || || ||||||| | || Sbjct 1182066 CCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCGTTGATAATTCGGAGAA 1182007 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 | || ||||| || || || ||||| || |||||||| | || |||||||| || | Sbjct 1182006 CGTTGAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGCTGAGAATCGTTGAAGT 1181947 Query 282450 ATGCAGGAACAGTAATAACGGC 282471 | ||||| ||||||| |||||| Sbjct 1181946 AGGCAGGGACAGTAACAACGGC 1181925 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| || |||||| || | || || |||||||| ||||||||||| | || |||||| Sbjct 1044428 GGTAAGGAGGGTCGTCTTCGTGGTAACTTGATGGGCAAGCGTGTCGACTTTTCGGCACGT 1044487 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||| | || || |||| | || |||||||| |||| || |||| Sbjct 1044488 ACTGTCATTACTGGTGATGCCAACCTTTCTCTACACGAGGTTGGTGTCCCTCGCAGTATT 1044547 Query 432408 GC 432409 || Sbjct 1044548 GC 1044549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740621219090262