Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq85 181 3e-40 seq27 154 4e-32 seq145 105 2e-17 >seq85 Length=1202620 Score = 181 bits (200), Expect = 3e-40 Identities = 562/859 (65%), Gaps = 13/859 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 1181580 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 1181639 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| ||| || || | || || Sbjct 1181640 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCCCAGAACACT 1181699 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || |||||| | || ||| | | || | ||| || | ||| Sbjct 1181700 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAT 1181759 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | | || | | ||| |||| ||| || | || ||||| Sbjct 1181760 ATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCAACATCGAGGTC 1181816 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTA 349558 || | || || || || || || ||| |||| || || || || | ||| | | Sbjct 1181817 GAGTTCAAGGGCGAGACCAAGAC---TTTCACCCCCGAGGAGATCTCTGCTATGATCCTC 1181873 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | ||||| | || | || || || || | | || ||| || Sbjct 1181874 ACCAAGATGCGTGAGACCGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTTGTT 1181933 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || ||| | |||||| || || || |||||||| ||| Sbjct 1181934 ACTGTCCCTGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 1181993 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| |||| || || || || |||||||| || ||||| || || Sbjct 1181994 GCCGGTCTCAACGTTCTCCGAATTATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 1182053 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | ||| || || | || || || ||| | ||||||||||| Sbjct 1182054 CTTGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGATCTTGGTGGTGGTACC 1182113 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | ||||| ||| Sbjct 1182114 TTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGT 1182173 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || ||||| || || || || || ||| Sbjct 1182174 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAATGAA 1182233 Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCT-AGAGCAATGCGTCGCCTAA 349976 || ||| | |||| || | ||| ||| | | | | | || |||| || || Sbjct 1182234 TTCAAGAG-AAAGCACAAGAAGGAT-TTGAGCACCAACGTCCGCGCCCTGCGACGTCTCC 1182291 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 ||||||| || || ||||| ||||| | | || || || | || ||||| || || | Sbjct 1182292 GAACTGCTTGCGAGCGTGCCAAGCGAACACTTTCTTCCTCTGCTCAGACCTCGATCGAGA 1182351 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 |||| ||||| || || | || |||| | || || || |||||||| || || | Sbjct 1182352 TTGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGTTTCGAGG 1182411 Query 350097 AATTATGTATGGATCTTTT 350115 | | || ||||||||| Sbjct 1182412 AGCTCTGCCAGGATCTTTT 1182430 Score = 113 bits (124), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 |||||||||||| | ||||| ||| || || | |||||||| || ||||| || || Sbjct 1046739 CGTGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTC 1046683 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 1046682 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 1046623 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 1046622 CCAGGGTTGACAA 1046610 Score = 111 bits (122), Expect = 5e-19 Identities = 193/277 (70%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||||||||| |||| ||| || || || Sbjct 1045978 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACGGC 1045919 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| || || | ||||| || Sbjct 1045918 AGTATCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTGGGAGTGAG 1045859 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | ||| || | || | || || | ||| | || || Sbjct 1045858 ACCACGGAGGTAAGAGTTCTCGACAAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 1045799 Query 378381 ATAATGAGGTAATGTACGAT-TCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCT 378439 | ||||||||||| |||| | | ||||| | | ||||| || || || |||||| | | Sbjct 1045798 GAAGTGAGGTAATGTGCGATATTTGAAACCGA-AAGGAATACGCTTGCCTTCAACAATTT 1045740 Query 378440 GTTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 | |||| |||| |||| |||||||| |||||| Sbjct 1045739 GCTGACCGACAAGCGCAG---TCATTTGAGAAATATT 1045706 >seq27 Length=3261259 Score = 154 bits (170), Expect = 4e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || |||||||| || || || || || || || Sbjct 1153448 CATACCACCACGAAGACGGAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 1153507 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||||||||| || || || ||||| || Sbjct 1153508 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGG 1153567 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| | Sbjct 1153568 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 1153626 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 1153627 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 1153678 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| |||| Sbjct 1153954 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTAT 1154013 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 1154014 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 1154073 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || ||||| || || | ||| || | Sbjct 1154074 CGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTATCGGAAG 1154133 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| || || || || || |||||||| Sbjct 1154134 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 1154188 Score = 131 bits (144), Expect = 5e-25 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 140498 AATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAAT 140557 |||| |||| ||||| || | || ||||| || || ||||| ||||| || || || Sbjct 1153211 AATAGCTTACTGGCCACCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGAT 1153270 Query 140558 ATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTG 140617 || || || || || || |||||||| | || || ||||| ||||| ||||| || Sbjct 1153271 GTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTG 1153330 Query 140618 CTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAAT 140676 ||||||||| || || || || ||||||||||| || ||| || || || || || | | Sbjct 1153331 CTGATCAGGGGGGATACCCTCCTTATCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGT 1153389 Query 140677 CAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || | ||||| ||||| || | |||||||| || || || || || |||||||||| Sbjct 1153390 CACTAGACTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAAATCTGCA 1153449 Query 140737 T 140737 | Sbjct 1153450 T 1153450 Score = 127 bits (140), Expect = 6e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| ||||| || || || || || | Sbjct 1153672 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGGATGTTGT 1153731 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 1153732 AGTCGGCAAGGGTTCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAGACGCTGCTGGT 1153791 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || ||||| || || | || ||||| || || | ||| || | Sbjct 1153792 CAGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTATCGGACG 1153851 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || || | ||||| || || || || || || Sbjct 1153852 ACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 1153894 >seq145 Length=1022755 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 404508 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 404449 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| ||||| Sbjct 404448 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGG 404389 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 404388 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 404329 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 404328 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 404278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250769545161