Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09] 187 sequences; 43,110,459 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq162 230 3e-55 seq106 141 1e-28 >seq162 Length=1634208 Score = 230 bits (254), Expect = 3e-55 Identities = 515/764 (67%), Gaps = 26/764 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || | | |||||| ||||| || | ||| ||| ||||| ||| Sbjct 858311 TCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 858252 Query 53253 ACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 || | ||| ||| |||| ||| ||||| || | || || || ||||| || || || Sbjct 858251 ACCTGATGT--CAAGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTTCAATGCCGGCAC 858194 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 ||| || || |||| |||||| |||| | |||||||| ||| || || || Sbjct 858193 CCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGACAGTATTGAGGG 858134 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| || |||||| |||||| ||||||||| | | |||||||| ||| | Sbjct 858133 AATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCT 858074 Query 53431 CCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCG 53486 | ||| | | | ||||||| | ||| || ||| || || ||||| | ||| Sbjct 858073 GAATGTGCACCGTA--TCCGTGCTACTGGCTCATACATCGCCGGTACCAACGGTACATCG 858016 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 | || |||| |||||||| || |||||||||||||| || ||||| ||| |||||| Sbjct 858015 A--ACGGTGTCGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGGTATGTCGACCAGG 857958 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| ||||| || | || ||||||||||||||||| |||||| | || | Sbjct 857957 GTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGTCT 857898 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGT 53666 | ||||| || || || ||| ||| || ||| | || ||| | || ||||||||| | Sbjct 857897 TCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGACCTTT 857838 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 | || || ||||| || || || || ||| | || || ||| ||| || ||| Sbjct 857837 TCCTTGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTGACTGGA 857778 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAAC 53785 || |||||||| ||||||||||| |||||| | | || |||||| |||||||| | Sbjct 857777 CACTTATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGAGAGGAGTTCGAG 857719 Query 53786 GAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 | |||| | |||| || | |||| ||| |||| | ||||||| Sbjct 857718 GCTCTGTACGAAAAGTACGAGAAGGCGGGCAAGGGTCGC------AAGACGATCAAGGCT 857665 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| | || || || || |||| ||||| |||| || | |||| | Sbjct 857664 CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATTCATGCTC 857605 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||| ||| | |||| ||||| ||||| |||||| |||| Sbjct 857604 TACAAAGATGCCTGCAACCGCAAGAGTAACCAAAAGAACCTCGG 857561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | || Sbjct 856735 TGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 856676 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | | ||||||||| || |||||| || |||||||| || Sbjct 856675 CACGATGGGCAAGATCACCAGCATGCACTTTGCAGGCTGGAAGCTTGGCCTCAAGACTGG 856616 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 856615 CATGTACTACCTTCGTAC 856598 >seq106 Length=1398316 Score = 141 bits (156), Expect = 1e-28 Identities = 210/296 (71%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || |||||||| ||||||||| || |||||||| ||||||||||| || | |||| Sbjct 221421 AGCCGAGTGAAGGTGTAACGAGGACTGGCAGCATCAGATCCACCAGCAAGTCGAGAACCG 221362 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | |||||| || |||| || | |||||| | || |||||||| || |||| | Sbjct 221361 AAGTTTCCACTGGGTTCCAGACAATTGATGTTGTTTGAACCAACAAAGTTCTGGGCCAGG 221302 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | || || |||||| | ||||| ||||| || || |||||||| | || Sbjct 221301 CCAATGATAGTCTGTTGGAGAGACTGTTCACCGTGGTGGTAGGCAGTCTGCTCAGAGACA 221242 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| | | | |||||| |||| ||||| | ||| |||||| |||||||| Sbjct 221241 TAACCAGCCAATTCAACGACCTTCTTGTCTTTGACG--ATGTTTCTCTTGAAGCAGGCAT 221184 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGC 117592 | || ||||| ||||||| ||||| | |||||| ||| ||||| || ||| Sbjct 221183 ATATGACCTTACGCTGACCGGGCTTGAAGCCATCCAGCACCGAGGGGATGGATCGC 221128 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| |||| || | ||||| ||||| ||||| || || || | || || Sbjct 221418 CGAGTGAAGGTGTAACGAGGACTGGCAGCATCAGATCCACCAGCAAGTCGAGAACCGAAG 221359 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||| || || |||| |||||| | || || || ||||| |||| Sbjct 221358 TTTCCACTGGGTTCCAGACAATTGATGTTGTTTGAACCAACAAAGTTCTGGGCCAGGCCA 221299 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || || ||| | |||||||||||| || || |||||||| | || || Sbjct 221298 ATGATAGTCTGTTGGAGAGACTGTTCACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAA 221239 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||| |||| | | ||| |||||| ||||| || || Sbjct 221238 CCAGCCAATTCAACGACCTTCTTGTCTTTGACGATGTTTCTCTTGAAGCAGGCATATATG 221179 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||||| ||||| || || || || |||| ||| Sbjct 221178 ACCTTACGCTGACCGGGCTTGAAGCCATCCAGCAC 221144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214720882600