Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023035.1_202015-06-09]
187 sequences; 43,110,459 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq27 104 2e-17
seq145 95.1 8e-15
>seq27
Length=3261259
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || ||||| || |||||||| || ||||| || |
Sbjct 1153450 ATGCAGATTTTCGTGAAGACTCTGACTGGAAAGACCATCACTCTTGAGGTTGAGTCTAGT 1153391
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | || || ||| || || || ||| | || || |||||
Sbjct 1153390 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 1153331
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || ||||||| | ||||| || |||| ||||||
Sbjct 1153330 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 1153271
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 1153270 ATCCAGAAGGAGTCAAC 1153254
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||| || ||||| || || ||||| ||||| || || |
Sbjct 1153678 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 1153619
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || ||| | || || |||||
Sbjct 1153618 GATACCATTGATAATGTGAAGAGCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 1153560
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||| ||||| ||||| || || | || ||| | ||| |||||
Sbjct 1153559 ACAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAA 1153500
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || || ||
Sbjct 1153499 CATCCAGAAGGAATCTAC 1153482
Score = 89.7 bits (98), Expect = 3e-13
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680
|||| || |||||||| || || || ||||||||||| || || || | || || | |
Sbjct 1153896 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGATACCATCG 1153837
Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739
| ||| |||| | || | | ||||| || ||| | || || || || |||||| |
Sbjct 1153836 ACAATGTTAAGTCGAAGA-TCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTG 1153778
Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799
|| ||||| || || ||||||||||||| || || | | ||| |||||||| || ||
Sbjct 1153777 ATTTTTGCTGGAAAGCAACTGGAAGACGGCCGAACCCTTGCCGACTACAACATCCAGAAG 1153718
Query 23800 GAGTCCAC 23807
|| || ||
Sbjct 1153717 GAATCTAC 1153710
>seq145
Length=1022755
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||||||||| || |||||||| || || || || ||
Sbjct 404275 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 404334
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || || ||||| || || | || || ||
Sbjct 404335 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 404394
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||||| | || ||||| ||||| || || || || | ||||| | |||| |||
Sbjct 404395 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 404454
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || ||||||||
Sbjct 404455 AACATCCAGAAGGAGTCCAC 404474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338008829654996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |