Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023045.1_202015-06-09] 835 sequences; 43,096,072 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq259 255 6e-63 seq443 143 3e-29 seq68 132 5e-26 seq92 120 3e-22 >seq259 Length=112471 Score = 255 bits (282), Expect = 6e-63 Identities = 550/810 (68%), Gaps = 18/810 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | ||||| Sbjct 41908 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 41849 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || ||||| | | | ||||||| | ||| ||| | | | |||| ||| || Sbjct 41848 TCTAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTC 41790 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| ||| || || || ||||||||||| || |||||||| Sbjct 41789 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 41730 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | ||||||| || || ||||||||||| |||||| || Sbjct 41729 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGAT 41670 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || |||||||||||| || | | || | Sbjct 41669 GGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTATATCAAGGAGCCCGC 41610 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | || || |||||||| ||||| || || ||| || | |||||| Sbjct 41609 C--CAGCGAACCTACCTT--TTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGG 41554 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| | || |||||| | | || | |||| | | | ||||| || | Sbjct 41553 CTGACTGGGCCATCCGATGGATCCAAGATAAGGACTCTTCCTTTGCCCAACGCCTCGTTG 41494 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | ||||| ||||| ||||| ||||||| || |||||| |||| || ||||||| Sbjct 41493 CTTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATTTTCTGGCTCA 41434 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || |||||||| || ||||| ||| |||||||||||||| | ||||||| Sbjct 41433 AGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCTAACGAGCTCATCTCTCGTGACGAGG 41374 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 41373 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTAAAGGGCCGTGCCAGCAAGC 41314 Query 117228 CG-CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | ||| || ||| |||| || || ||| |||| || ||| |||||||| || Sbjct 41313 AGATGATTCA-AGATATCATCACTGATGCCGTCACCATTGAACAGGAGTTCCTCACTGAG 41255 Query 117287 GCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345 || | | || |||| || || || | || | || ||| ||| ||||| ||||| Sbjct 41254 GCTCTTCCCTGTGC-CCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTT 41196 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 |||||| || | || || ||| || | | || ||| |||||| | ||||||| Sbjct 41195 CGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCC 41136 Query 117406 GCTGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| ||| | ||||| |||||| Sbjct 41135 CTTCGACTTCATGGAAAACATCTCCCTTGG 41106 >seq443 Length=545840 Score = 143 bits (158), Expect = 3e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 425554 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 425495 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 425494 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 425436 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 425435 CCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 425376 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || || || || Sbjct 425375 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 425343 >seq68 Length=53621 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || | | Sbjct 47988 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCT 47929 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| |||||||||||| | ||||| Sbjct 47928 GACACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 47870 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | ||| ||||| ||||| || |||| ||||| ||| || ||||| Sbjct 47869 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 47810 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || ||||| || Sbjct 47809 CATTCAGAAGGAGTCCACTCTTCATCTTGT 47780 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40695 AATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAG 40754 |||| |||| || || ||||| ||||| |||||||| |||| ||||| | |||| | Sbjct 47701 AATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGATAC 47642 Query 40755 CGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | | | | ||| || || | ||||| ||||| ||||| | |||||||| || Sbjct 47641 CATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCG 47582 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 || || | || || || || ||||| |||| || ||||| ||||||||||||||| Sbjct 47581 TCTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGAACCCTTGCCGACTACAACATCCA 47522 Query 40875 GAAGGAGGCCACGCTGCATCTAGT 40898 |||||| | || || ||||| || Sbjct 47521 GAAGGAATCTACCCTTCATCTCGT 47498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||| || | || ||||| | || Sbjct 47478 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 47419 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| || || |||| || Sbjct 47418 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAA 47359 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || ||||| || || || || | || || || |||||||||| Sbjct 47358 CAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 47299 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 47298 ATCCAGAAGGA 47288 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || || || | | Sbjct 47250 ATGCAGATTTTCGTGAAGACTCTGACTGGAAAGACCATCACTCTTGAGGTTGAGTCTAGT 47191 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || ||||| |||||| | || || Sbjct 47190 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCA 47132 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC------CTCAACGA 40862 ||| || || |||| ||| || || ||| |||| || | |||||| ||| Sbjct 47131 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTNNNNNNNNNNCGA 47072 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||||||||| | || || || || || Sbjct 47071 CTACAACATCCAGAAGGAGTCAACTCTCCACCTCGT 47036 >seq92 Length=291394 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 166214 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 166155 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||||| Sbjct 166154 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 166095 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || || || || || | || || ||| ||||||||||||||||||| Sbjct 166094 ATCTTCGCTGGTAAGCAACTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 166035 Query 40879 G 40879 | Sbjct 166034 G 166034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213822399600