Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023045.1_202015-06-09] 835 sequences; 43,096,072 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq443 122 8e-23 seq68 120 3e-22 seq705 93.3 4e-14 >seq443 Length=545840 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| |||||| Sbjct 425325 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 425384 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 425385 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 425444 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 425445 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 425504 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 425505 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 425551 >seq68 Length=53621 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || |||||||| |||||||||||||| Sbjct 47762 CCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 47821 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| | || || || |||||||| || ||| Sbjct 47822 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGG 47881 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||| || | ||||| | Sbjct 47882 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACC 47941 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||| || ||||| || || || ||||| |||||||||| Sbjct 47942 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGA 47990 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| || ||||| || |||||||| ||| Sbjct 47480 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 47539 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || ||||| || || | || | |||||||||||| |||||| Sbjct 47540 AGGGTTCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGG 47599 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | ||||||| ||||||| Sbjct 47600 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCGACC 47659 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | ||| || || || || || || |||| Sbjct 47660 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 47696 >seq705 Length=184299 Score = 93.3 bits (102), Expect = 4e-14 Identities = 329/509 (65%), Gaps = 14/509 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||||||||| || || | ||||| || || | || || ||| |||| Sbjct 122695 TTAACAACCTGAAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGC 122636 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | ||| | || || ||||| || | Sbjct 122635 TCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGG 122576 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTT---AGCGTACCCCAATCC 145234 | || ||||| | |||||| |||||| |||||| | || || |||| ||| Sbjct 122575 AGTAGACTGTTGCGGATGCCGTGTGTCTTGA---CTTCCTCTCGAAGAGTCTCCCAGTCC 122519 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || || || ||| | |||| |||||||||| |||| | ||| ||||| ||||||| Sbjct 122518 CAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCGGGG 122459 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAG- 145353 || | |||| ||| ||| || || |||| ||| || ||| Sbjct 122458 GAACCCTTGAAGGTGGAGTAGGGACCCTCTTCCTTAGCCAGCT-GCA---CGGAGGCAGT 122403 Query 145354 -AGCGC--CGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCT 145410 ||||| || |||||| ||||| ||| ||| | |||||| || || | Sbjct 122402 CAGCGCAGCGTGATAAATGGTCTCAAAAATCTGCTTATTGAGCTCACGAGCCTCGGGGGA 122343 Query 145411 CTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGAT 145470 |||| | ||||||||||| | ||||||||||| || ||||| | || | || || Sbjct 122342 CTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGACCCTGAACACCAAGACCAAT 122283 Query 145471 GGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 ||| || || |||||| || | | ||| || || ||| || | || ||||| Sbjct 122282 GGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGAT 122223 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCT 145559 || || |||| ||| || | || |||| Sbjct 122222 GATCTTGTTCAGGTTGCGAATAACAACCT 122194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007873366400