Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023045.1_202015-06-09] 835 sequences; 43,096,072 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq259 122 2e-22 seq506 107 4e-18 seq75 93.3 9e-14 >seq259 Length=112471 Score = 122 bits (134), Expect = 2e-22 Identities = 294/443 (66%), Gaps = 8/443 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| |||||||||||||||||||| ||| Sbjct 41085 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTTTCCATGAAGTCGAAGGGGTTGGTG 41144 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 41145 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 41204 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 41205 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 41264 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| ||| ||| || || || | || | | ||| ||| | | | | Sbjct 41265 AACTCCTGTTCAATGGTGACGGCATCAGTGATGATATCTTGAATCATCTGCTTGCTGGCA 41324 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| | |||| | ||| ||||||||||| Sbjct 41325 CGGC----CCTTTAGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTCGTC 41380 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| |||||| || | ||| |||||||| | ||||| ||| ||||||| Sbjct 41381 ACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCA 41440 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 ||| || | | |||| ||| ||| | | |||||| || | | ||||| || Sbjct 41441 GAAAATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCGAAAGCAACGAG 41500 Query 251979 GCGCTCAGCAAACGACTTGTCCT 252001 ||| | ||||| || ||||| Sbjct 41501 GCGTTGGGCAAAGGAAGAGTCCT 41523 >seq506 Length=245404 Score = 107 bits (118), Expect = 4e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 165608 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 165549 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| |||||||||| | || |||||||| ||||||||| || | Sbjct 165548 CAGACTCATCTCCGTCTCAAGCGTGGTCAGCGTTATGGTCTTTGCGGTCCCAACGGTTCC 165489 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 165488 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 165430 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 165429 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 165384 Score = 93.3 bits (102), Expect = 9e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || || | ||||| || ||||| ||||| || |||||||| || ||| Sbjct 164801 TCTCTGGGCTCCCGTATCGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 164742 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 164741 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 164682 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| |||||||| |||| |||| Sbjct 164681 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCACCTTGACAAGACT 164622 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | || || || ||||| | | || | ||| |||||| ||| | |||| || Sbjct 164621 CCTTCCGAGTATATCCAATGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 164563 >seq75 Length=205816 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 151548 AGTTGGTTCCCTTTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 151607 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||||||||| || ||||| || || || || || ||||| | || ||||| | || Sbjct 151608 GCGTGCCGACGTTCTACTTCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 151667 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 151668 TTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 151725 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| || ||||| || Sbjct 151726 GACTCCGGATTCCTGGA 151742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825803752235