Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023045.1_202015-06-09] 835 sequences; 43,096,072 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq705 233 4e-56 seq259 161 2e-34 >seq705 Length=184299 Score = 233 bits (258), Expect = 4e-56 Identities = 809/1235 (66%), Gaps = 69/1235 (6%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||| |||||||| || ||||||||||| ||| ||| ||||| ||| | |||||||| Sbjct 122404 GTCAGCGCAGCGTGATAAATGGTCTCAAAAATCTGCTTATTGAG-CTCACGAGCCTCGGG 122346 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||| ||||| | | ||||| | ||||| || ||||| || || | | Sbjct 122345 GGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGACCCTGAACACCAAGA 122288 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 122287 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 122230 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | | || | | |||| | |||||||| | Sbjct 122229 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGA 122170 Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | | | ||| ||| | ||| || || | ||| |||||| Sbjct 122169 AGTCGTAG--CAA---GCCTCATCGTAGTTGATG----------AAGG----AGGGCAGA 122129 Query 221710 GCT-----GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 | | ||| ||||| || ||||| |||||||| | |||| || || || Sbjct 122128 GATAGAGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCA 122069 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || || ||| || |||||| || |||| || || ||| |||||| ||| Sbjct 122068 GTGCAAAGATTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAG 122009 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 || || ||||||||||| || || || ||||| ||| ||| | ||||| || | Sbjct 122008 GCATCTTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTAC 121949 Query 221885 CAGAGTTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATA 221937 || || | |||| || | | |||| | |||| | || |||| |||||| || Sbjct 121948 CAAAGCT-TCTGAGCCTTGATCGTCTTGCGACCCTTGCCCGCCTTCTCGTACTTTTCGTA 121890 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 | ||||| | | |||| || ||||| ||| | ||||| || ||| | Sbjct 121889 C-------AGAGCCT--CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTT 121839 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| ||||| || |||||| ||| | || || | || ||| || || || ||||| Sbjct 121838 GGGGCACATAAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGAT 121779 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| || || | || || || | || || ||||||| |||| ||| || | || Sbjct 121778 CCAAAGGGCAAGGAAAAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAG 121719 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||| | ||||| || | |||| |||||| ||||| || |||| ||| | ||| ||||| Sbjct 121718 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 121659 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCG 222236 |||||||||||||||||| || | ||| | ||| | |||||||| ||||| | | Sbjct 121658 TCGCTTGTTGCCACCCTGGTCGA-CATACCGAGCAGTGTTGTTGAAGACACGAAGCATAG 121600 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 | || | ||||| ||| ||||||||| || ||||| | || || | || Sbjct 121599 GAACGACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCAC---GGA 121543 Query 222297 TACTG-GCAGA--CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| | ||| | || || |||||||| || || ||||||||||| ||| |||||| Sbjct 121542 TACGGTGCACATTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 121483 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 |||| || ||| ||||| ||| ||| ||||| | | | || || ||||| |||| Sbjct 121482 GAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACA 121423 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 || | | | || | ||| || || |||||||| || || || ||| | | Sbjct 121422 ATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGC 121363 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGA-ATCTGCAT 222531 | |||||||| | ||| ||||| | ||||| |||| | || ||| || | | || Sbjct 121362 TTGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACA- 121304 Query 222532 GGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGC 222589 | | || | |||| ||||| ||| || | ||| ||| || | | || ||| Sbjct 121303 GACACA-CGCATGATCATGTGCTGTGGGCGCTCGACAATCTTACCGTCAATCT--TGAGG 121247 Query 222590 AGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||||| ||| |||| ||||||||| |||||||| Sbjct 121246 AGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 121212 >seq259 Length=112471 Score = 161 bits (178), Expect = 2e-34 Identities = 380/571 (67%), Gaps = 11/571 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| || || |||||||| || Sbjct 41908 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 41849 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | ||||| | ||| |||| || || || | || |||||| || || Sbjct 41848 TCTAAGGATCTCCACGACTGGAACAACCGC-CTGACTGCCGATGAGCAGTTCTTCGTCTC 41790 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||||||||| || |||||||| || |||| | Sbjct 41789 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 41730 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | || || ||| | ||||| ||||||||||| |||||||| || Sbjct 41729 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGAT 41670 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || || || || || || || || | || Sbjct 41669 GGAGAACATTCACTCCGAGACCTACTCC---CTCCTCATCGACACCTATATCAAGGAGCC 41613 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 41612 CGCCCAGCGAACCTACCTTTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGC 41553 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | || | || | |||| | | || || || || Sbjct 41552 TGACTGGGCCATCCGATGGATCCAAGATAAGGACTCTTCCTTTGCCCAACGCCTCGTTGC 41493 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || ||||| || ||||| ||||| ||||| ||| | || || |||| ||||||||||| Sbjct 41492 TTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATTTTCTGGCTCAA 41433 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || ||| ||| || |||||||||||| | |||||||| Sbjct 41432 GAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGG 41373 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| |||| || ||||||||||| ||| || Sbjct 41372 TCTTCACACTGACTTTGCCTGCCTCCTCCAC 41342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835105182400