Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023045.1_202015-06-09] 835 sequences; 43,096,072 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq92 138 3e-27 seq443 136 9e-27 seq621 111 4e-19 seq68 107 5e-18 seq705 95.1 3e-14 >seq92 Length=291394 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||||| ||||| || || ||||| ||||||||||| Sbjct 166036 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGTTGCTTACCAGCGAAGATC 166095 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 166096 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 166155 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 166156 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 166214 >seq443 Length=545840 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| ||| || || | ||||| Sbjct 425340 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 425399 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || || || || |||||||| Sbjct 425400 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 425459 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||||||| Sbjct 425460 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 425519 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 425520 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 425554 >seq621 Length=2123 Score = 111 bits (122), Expect = 4e-19 Identities = 198/282 (70%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || || ||||||||||| | | || ||||| ||||| |||||| ||||| || | Sbjct 291 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCCTTTTCAGTGTT 349 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGG-GTTCTCAAATATTGAGTGGTAATAGCCAACTT 7557 || || | ||| ||||| | | || |||| ||||| | | ||||| ||| | Sbjct 350 AATTAGACTTGAACTTAGCGGGCCAGGAGTTC---AATAT--ATTTCTAATAATCAATTA 404 Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || ||| | | ||||| || || || | | ||||| ||||| | |||||||| | Sbjct 405 TATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCTGCA 464 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | ||||| || || ||||||| || | ||||||||| | |||| ||| |||||||| Sbjct 465 TTAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGTGGTCCGGATATGGCA 524 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || || | || ||||||||||| |||||| |||| ||| Sbjct 525 TTCCCTAGATTAAATAATATAAGTTTCTGATTATTACCCCCT 566 >seq68 Length=53621 Score = 107 bits (118), Expect = 5e-18 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCA----- 225547 ||||||| || || ||||||||||| || || || |||| ||||| ||| Sbjct 47024 CGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGNNNNNNNNN 47083 Query 225548 -AAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGA 225606 | || | |||||||| | |||||| |||||||||||||| || || || || || || Sbjct 47084 NAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGG 47143 Query 225607 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACG 225666 ||||| ||||| || || ||||| |||||| ||||| ||||| | || || Sbjct 47144 ATACCCTCCTTATCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTAGACTCAACC 47203 Query 225667 TCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || | ||||| ||||| || |||| ||| || | ||| | ||||| Sbjct 47204 TCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAAATCTGCAT 47250 >seq705 Length=184299 Score = 95.1 bits (104), Expect = 3e-14 Identities = 184/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 || ||||| |||| || | ||| |||||||||| ||||| || | || ||| Sbjct 122032 TTTTGGTTACTCTTGCGGTTGCAGGCATCTTTGTAGAGCATGAATGGGTTTCCGGTCTCA 121973 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || | |||||| | |||||| | ||||| || | ||| | | |||| Sbjct 121972 GTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATCGTCTTGCGACCCTTG 121913 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || || ||||||||||||||||||| |||| || || | ||||||| ||| |||| Sbjct 121912 CCCGCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 121853 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || ||||| | || |||| || || | |||| || | |||||| Sbjct 121852 CCAGGGCACTCGTTGGGGCACATAAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATA 121793 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || || |||| |||||| ||| |||||| Sbjct 121792 AAAAGATCAGGGATCCAAAGGGCAAGGAAAAG 121761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192518441779490