Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq362 123 3e-23 >seq362 Length=14512 Score = 123 bits (136), Expect = 3e-23 Identities = 547/858 (64%), Gaps = 26/858 (3%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| || | ||||| || ||||| || || || || || | | || || ||| Sbjct 12211 TTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTT 12152 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGA-AAT 33409 |||||||| || || || ||||| | ||||| | || | | |||| || || Sbjct 12151 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGT-TGCCAAGAGCGACAAG 12093 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 | | ||| |||||||| || || || ||||| | ||| | ||||| || | || Sbjct 12092 GAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAG 12033 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | ||||||||| |||| || || || |||||||||| || |||| || || || Sbjct 12032 GGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGTTCAATGGTGACGGCATCAGTGATGAT 11973 Query 33530 A-----AATCTAACGGTTTCTTCACTCGG---TGGATGTAATAAATGTTTAAACATCAAA 33581 | |||| | | | || | | ||| | | || | | | | | Sbjct 11972 ATCTTGAATC-ATCTGCTTGCTGGCACGGCCCTTTAGGTGAGAGTGG-------AGGAGG 11921 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || || ||| ||||||||||| | | || | |||||||| || || || Sbjct 11920 CAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGA 11861 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| || ||||| || ||||| ||||| | || |||||| Sbjct 11860 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGCACCACTGAAGAAG 11801 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33758 || || || || ||||| || |||| || | | || || | | | || || Sbjct 11800 ATACCCTCAACGGCAGCGAAAGCAACGAGGCGTTGGGCAAAGGAAGAGTCCTTATCTTGG 11741 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| || ||||||||| | || || || || || ||||| || Sbjct 11740 ATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 11682 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || || ||| || | || || | ||| || ||||| | || || | Sbjct 11681 GAAAAGGTAGGTTCGCTGGGCGGGCTCCTTGATATAGGTGTCGATGAGGAGGGAGTAGGT 11622 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || |||||||| || || ||||| || ||||||||||| | |||||||| || Sbjct 11621 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAACAACGAGCCTCGGGGAT 11562 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || || ||||| || | | || || || || || |||||| ||| || Sbjct 11561 CTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGC 11502 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 || || || | | || | || | | || || | || | | || ||||| Sbjct 11501 GAAGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCA 11442 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | || ||| ||||| | || | || || | ||||| || || ||||| ||||| Sbjct 11441 GTCGTGGAGATCCTTAGAGAGGTCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTT 11382 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | ||| || Sbjct 11381 CTTGTACATTTGCCAAAT 11364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629794304621520