Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq362 127 3e-24 >seq362 Length=14512 Score = 127 bits (140), Expect = 3e-24 Identities = 542/850 (64%), Gaps = 10/850 (1%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| || | ||||| || ||||| || || || || || | | || || ||| Sbjct 12211 TTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTT 12152 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA-AAT 33131 |||||||| || || || ||||| | || || | || | | |||| || || Sbjct 12151 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGT-TGCCAAGAGCGACAAG 12093 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 | | ||| |||||||| || || || ||||| | ||| | ||||| || | ||| Sbjct 12092 GAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAG 12033 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | ||||||||| |||| || || || |||||||||| || ||||| || || || Sbjct 12032 GGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGTTCAATGGTGACGGCATCAGTGATGAT 11973 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | | || | | | || | | | || || | | || || || Sbjct 11972 ATCTTGAATCATCTGCTTGCTGGCACGGCCCTTTAGGTGAGAGTGGAGGAGGCAGGCAAA 11913 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 || ||| ||||||||||| | | || || ||||| || || || || || ||||| Sbjct 11912 GTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCAT 11853 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || |||||||| || ||||| || ||||| ||||| | ||| |||||||| || || Sbjct 11852 GAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGCACCACTGAAGAAGATACCCTC 11793 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCA-CT 33487 || ||||| || |||| || | | || || | | | || || ||||| | Sbjct 11792 AACGGCAGCGAAAGCAACGAGGCGTTGGGCAAAGGAAGAGTCCTTATCTTGGATCCATCG 11733 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 || ||||| || ||||||||| | || || || || || ||||| || || || | Sbjct 11732 GATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAAAGGT 11674 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 || || | || || | ||| || ||||| | || || | || || | Sbjct 11673 AGGTTCGCTGGGCGGGCTCCTTGATATAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGT 11614 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 ||||||| || || ||||| || ||||||||||| | |||||||| ||||| || | Sbjct 11613 GAATGTTCTCCATCATGATCTGGAAGCCGTAGAAACAACGAGCCTCGGGGATCTGGACCT 11554 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | || ||||| || | | || || || || || || ||| ||| || || || | Sbjct 11553 CGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAG 11494 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGA 33784 | | | || | || | | || || | || | | || ||||| || | || Sbjct 11493 CAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGA 11434 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 ||| ||||| | || | || || | ||||| || || ||||| ||||| || |||| Sbjct 11433 GATCCTTAGAGAGGTCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACA 11374 Query 33845 TGTTCCAGAT 33854 | | ||| || Sbjct 11373 TTTGCCAAAT 11364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622924158740440