Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2723 140 2e-28 seq338 113 3e-20 >seq2723 Length=800 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 328 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 269 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 268 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 234 >seq338 Length=10966 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||||||| |||||| ||||| ||||||||||| | | ||| |||| || | || Sbjct 6580 ATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCAAGCTG 6521 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || ||||| || || | |||||| || |||| ||||| ||| || |||||| ||| || Sbjct 6520 CTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTT 6461 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || || | || ||| || | ||||| || | || || || || || || Sbjct 6460 GGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 6401 Query 38294 CAAGGTTTTCACGAATATCTGCATG 38318 || ||| || ||||| ||||||||| Sbjct 6400 CAGGGTCTTGACGAAGATCTGCATG 6376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935120861929