Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq362 111 3e-19 seq19 91.5 3e-13 >seq362 Length=14512 Score = 111 bits (122), Expect = 3e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | ||| |||| ||| | || ||| |||| || Sbjct 11973 ATCATCACTGATGCCGTCACCATTGAACAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCC 12032 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | |||||||||||||| |||||| |||||||| || ||||| || || || | Sbjct 12033 CTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTC 12092 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| ||||| | ||||| || ||||| ||| |||||||| | ||| ||||| Sbjct 12093 CTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAA 12152 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| || ||| || || || ||||||||||| |||||||| Sbjct 12153 AACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 12196 >seq19 Length=5907 Score = 91.5 bits (100), Expect = 3e-13 Identities = 171/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 334107 TCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTC 334166 |||||| | | ||| | || ||| | ||| || ||||| || ||| | |||| || Sbjct 3592 TCAATGGTGGTCATCTCAGTATCAGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCTTG 3533 Query 334167 AAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGT 334225 | | || || |||| |||||| ||| ||| |||| || |||||||| ||||| Sbjct 3532 ACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGAGT 3474 Query 334226 TGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAA 334285 || || || | ||||| || || || ||||| || || | |||||||| ||| || Sbjct 3473 GGACTTTCCGGAACCGTTGGGACCGCAAAGACCATAACGCTGACCACGCTTGAGACGGAG 3414 Query 334286 CCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAG 334345 | || | ||| |||||||| || |||| || || ||||| || ||| | || || Sbjct 3413 ATGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAAAG 3354 Query 334346 ATCCTCACC 334354 ||||||||| Sbjct 3353 ATCCTCACC 3345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102838187406650