Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2917 197 2e-45 seq362 141 1e-28 seq487 82.4 9e-11 >seq2917 Length=53793 Score = 197 bits (218), Expect = 2e-45 Identities = 1126/1786 (63%), Gaps = 47/1786 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| ||||| ||||||| || | | |||||| || || ||||| || || Sbjct 46340 CCCACAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGT 46399 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| || |||||| | | |||| || || | || || ||||| Sbjct 46400 CTTGGAGACATACAACCTGATGTCAAGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTT 46459 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || || || || |||||| |||| ||| ||| | ||| | ||||| || Sbjct 46460 CAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGA 46519 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| ||||||| |||||| ||||| ||| |||||| Sbjct 46520 CAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 46579 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 |||||| || || | | || | || | || | | ||| || | | ||||| Sbjct 46580 TGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACT--GGCTCATACATCGCCGGTACC 46637 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| ||| | ||| | |||| |||||||| || || ||| ||| || || ||| Sbjct 46638 AACGGTACATCGAACGGTGTCGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGGTAT 46697 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||| | ||| ||| | | || || | || |||| || ||||| ||| Sbjct 46698 GTCGACCAGGGTGGCAACAAGCGACCC---GGTGCTTTTGCCATCTACCTCGAGCCTTGG 46754 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| || Sbjct 46755 CACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGT 46814 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || || ||| || || ||||| || ||||| || |||||| | ||||| || Sbjct 46815 GCCCGTGACCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAG 46874 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || | ||| | || | || || | || || || ||| |||| | || Sbjct 46875 AACGGTGACTGGACACTTATGTGCCCCAATGAGTGCCCTGGCCTCGCCGACTGCTACGGA 46934 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-----CGA 112257 |||||||| || || || ||| |||||||||| ||| ||||| | | || Sbjct 46935 GAGGAGTTCGAGGCTCTGTACGAAAAGTACGAG-----AAGGCGGGCAAGGGTCGCAAGA 46989 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 || | | || | || | | ||| | || ||||| || | || || ||||| || | Sbjct 46990 CGAT-CAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAAC 47048 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 |||| ||||| |||||||| ||||| |||| |||||||| |||||||| | ||| Sbjct 47049 CCATTCATGCTCTACAAAGATGCCTGCAACCGCAAGAGTAACCAAAAGAACCTCGGTACC 47108 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || ||||| || || || ||||| | || | | | || ||| || Sbjct 47109 ATCCGAAGCTCCAATCTTTGCACTGAAATTATCGAGTACTGTGCCCCTGACGAGGTCGCC 47168 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || || ||||| || || | |||| ||| | | || || | || || Sbjct 47169 GTCTGCAACCTTGCCTCTCTATCTCTGCCCTCCTTCAT-----CAACTACGATGAGGCTT 47223 Query 112497 -----GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 || | | || || ||| | || | | ||| | ||||| |||| Sbjct 47224 GCTACGACTTCAAGAAGCTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGA 47283 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 | || ||| || ||||| || || ||||| || ||| ||| | ||||| | Sbjct 47284 TCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGAC 47343 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 112670 | |||||||| ||||| || ||||| || |||| ||| || || || ||| | || Sbjct 47344 CCATTGGTCTTGGTGTTCAGGGTCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTC 47402 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || ||| ||| || || ||||| || || |||||||| || |||||||| || Sbjct 47403 GAGTCCCCCGAGGCTCGTGAGCTCAATAAGCAGATTTTTGAGACCATTTATCACGCTGCG 47462 Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 || || | || |||| ||| || ||||| || ||||| ||||||| Sbjct 47463 CTGACTGCCTCCGTGCAGCTGGCTAAGGAAGAGGGTCCCTACTCCACCTTCAAGGGTTCC 47522 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 112850 || || || | || | || || || || |||||| | | || || | || Sbjct 47523 CCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGG 47582 Query 112851 GACTGGGACGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 |||||||| ||| || || | | | ||||| | || | || |||||||| | Sbjct 47583 GACTGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGCAACAGTCTACTCC 47640 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || ||||| || ||| ||| | || || |||| || || || ||||| || | Sbjct 47641 TTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGC 47700 Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028 ||||||| | || ||||| | | | ||||| || ||||| | |||||||| Sbjct 47701 CCTACACCTCCAATATCTACCAACGCCGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACC 47760 Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 113088 || | | ||||| || || ||||| |||||| | | ||||||| | | || Sbjct 47761 CCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCA 47820 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | | | | ||| |||||||| || ||| | || || | || | ||| Sbjct 47821 TCATTGCTGAGAATGGATCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTC 47880 Query 113149 TGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTG 113208 |||| || |||||||| ||| | | ||| | | ||||| || ||||| | Sbjct 47881 TGTATAAGACTGTTTGGGAGATCTCTCAGCGCCAGGTCGTCCAGATGGCTGCTGATCGAG 47940 Query 113209 GTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTC 113266 || ||||||||||| |||| ||| |||| | |||| | || |||||| Sbjct 47941 GTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATGGG 47998 Query 113267 CAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATT 113325 |||| || | |||||| | | || | |||||| || ||||| || || ||||| | Sbjct 47999 CAAGATCACCAGCATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACT 48057 Query 113326 ACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 113371 |||| || | |||| || || |||||||||| | |||| Sbjct 48058 ACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 48103 >seq362 Length=14512 Score = 141 bits (156), Expect = 1e-28 Identities = 206/286 (72%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA-GCCATCCA 102106 ||||| |||| ||||| ||||| || || ||| | | ||| || ||||| | Sbjct 11634 CTCATCGACACCTATATCAAGGAGCCCGCCCAGC-GAACCTACCTTTTCAACGCCATTGA 11692 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 || |||| || || | |||||| || || ||||| || ||| | | | || | Sbjct 11693 GACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAAGATAAGGA 11752 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | ||||||||| | || ||| | || || || |||||||||||||||||| || Sbjct 11753 CTC-TTCCTTTGCCCAACGCCTCGTTGCTTTCGCTGCCGTTGAGGGTATCTTCTTCAGTG 11811 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || ||||| | | |||| |||||||||||||| ||||||||||| ||||| ||||| Sbjct 11812 GTGCCTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCT 11871 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | |||||||| ||||||||||||||||| || ||| || ||||| Sbjct 11872 CTAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGC 11917 >seq487 Length=35546 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 163548 ATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGCGG 163607 |||| || |||| || ||||| ||||||||| || || || | || || | Sbjct 4719 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 4660 Query 163608 GTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 163667 |||| || ||| |||| ||| ||| | ||||| ||| | |||||||| ||| || Sbjct 4659 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 4600 Query 163668 AAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAG 163717 ||||||||||| ||| ||| || ||||| || ||||||||||| ||| Sbjct 4599 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAG 4550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719440290480