Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2917 233 2e-56 seq2019 98.7 1e-15 >seq2917 Length=53793 Score = 233 bits (258), Expect = 2e-56 Identities = 1080/1691 (64%), Gaps = 57/1691 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 ||||| || ||||| || || ||||| ||| |||||| || | || | ||||| | Sbjct 48064 CGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATGCTGGT 48006 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||||| ||||| |||||||| ||||| Sbjct 48005 GATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAA 47946 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582 ||| |||||||| ||||| | || || | | ||| | | ||||| |||| Sbjct 47945 GGCACCTCGATCAGCAGCCATCTGGACGA----CCTGGCGCTGAGAGATCTCCCAAACAG 47890 Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639 |||| |||| | ||||| ||| | || |||| ||||| ||||| || ||| Sbjct 47889 TCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGATCCATTCT 47830 Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 |||| | | || | | |||||| | | ||||| ||||| | | | || | || Sbjct 47829 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 47776 Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | || || | ||||| || || |||||||| || || || |||||| Sbjct 47775 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGA 47716 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 | || | |||||||| ||||| ||||| |||||||| || || || | || || | Sbjct 47715 TATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAG 47656 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 | ||||| ||||| | ||| |||||||| |||| || | ||||| || ||| || | Sbjct 47655 TAGGCATAGGAGCAAGGAGTAGACTGTTGCGGATGCCGTGTGTCTTGACTTCCTCTCGAA 47596 Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 | ||||| || | | || | || | | |||||| || || | Sbjct 47595 GAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGTCGAACTGGA 47542 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996 | | |||||||| || || ||||||||||| | ||| | ||||| ||| |||| Sbjct 47541 GAATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCTTCCTTAGCCA 47482 Query 109997 ACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCA 110053 || |||| | || | || || || ||||| || ||||||||||| || ||| | Sbjct 47481 GCTGCACGGAGGCAGTC---AGCGCAGCGTGATAAATGGTCTCAAAAATCTGCTTATTGA 47425 Query 110054 TGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAGA 110112 |||| ||| | |||||||| | | || || || || |||| || ||| Sbjct 47424 GCTCACGAGCCTCGGGGGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGCATCGGCAAGA 47366 Query 110113 CCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACG 110172 ||||||||||| ||||||||||| || || ||||||| | ||||| | || Sbjct 47365 CCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGACA 47306 Query 110173 GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCA 110232 ||||| ||| ||||||| | || || || | ||| || ||| | Sbjct 47305 GGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTG 47246 Query 110233 TGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGAGCAAT 110291 || || || | | | ||| | | | || | || |||| | ||| |||| | Sbjct 47245 TGCAGCTTCTTGAAGTCGTA-GCAAGCCTCATCGTAGTTGATGAAGGAGGGCAGAGATAG 47187 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACA 110351 ||| ||||| ||||| || | |||||| | | ||| || | |||||| || || Sbjct 47186 AGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGCA 47127 Query 110352 CAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATC 110411 | ||||| || ||| ||| | |||||| || || ||| |||||| ||||| Sbjct 47126 AAGATTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAGGCATC 47067 Query 110412 CTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA- 110470 || ||||||||| ||||| | || || || ||||| | || |||||||| | ||| | Sbjct 47066 TTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 47007 Query 110471 CATCGGCGGCGGGGACAG-TTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | || | | | | | ||||| | | || ||| ||||||||| ||||| Sbjct 47006 CTTCTGAGCCTTGATCGTCTTGCG--ACCCTTGCCCGCCTTCTCGTACTTTTCGTACAGA 46949 Query 110530 TCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 |||| || |||| |||||| || | || || || | ||| || | || Sbjct 46948 GCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCATTGGGGCACATAAGT 46889 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 | ||| | || || ||||| | |||||| || || ||||| ||||| | || | Sbjct 46888 GTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCAAGG 46829 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 |||||||||||| ||| |||| || | ||| ||||| || || || | || || Sbjct 46828 AAAAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAACTCG 46769 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAG------ACAGCGATGGATCCCTTACGACGA 110763 | || ||| |||||||| || ||||| ||| | ||| || || ||| | | Sbjct 46768 AAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT--GTTG- 46712 Query 110764 CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 || |||||| ||||| || || ||| |||||||| | |||||||||| | || Sbjct 46711 CCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACGACACCG 46652 Query 110824 TCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGC 110883 | ||| ||| || ||||| || || | | ||||| || ||| | || | Sbjct 46651 TTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTC 46592 Query 110884 ATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAAT 110942 | |||||||||||| ||| ||| || ||||| ||| |||| ||| | || || Sbjct 46591 AGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAGTATCGTAGAT 46533 Query 110943 ACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGG 111002 || ||||| || |||| | ||| | |||||||| |||| || || |||| Sbjct 46532 TCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGG 46473 Query 111003 CGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTG 111060 || || ||||||||||| || || | ||||| ||| ||| |||| |||||| | Sbjct 46472 GGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGA--AGAACTTGCTTGACATCAGG 46415 Query 111061 TTGTATGTGTC 111071 |||||||| || Sbjct 46414 TTGTATGTCTC 46404 >seq2019 Length=6618 Score = 98.7 bits (108), Expect = 1e-15 Identities = 307/465 (66%), Gaps = 24/465 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || ||||| || | | || | || || ||||| | || || || | Sbjct 4302 CGGTCGAACCGCCCTGGTCGCATCAAGGCTTTGTCGAGCATATCCGCTCGATTAGTGCCA 4361 Query 11563 GCAATGACTACAATGCCAG-TCTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| || |||| || | || | | | | ||||||||||||||| ||||||| ||||| Sbjct 4362 GCAAGAACAACAA--CCTGCTCGCGAGTATTGAAACCGTCCATTTCAGTGAGAATCTGGT 4419 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | | || ||| |||||||||||| | | || || | |||| | | | | | Sbjct 4420 TCAGAGTTGCTTCCCGCTCATCGTTGCCACCGAATCCC--CGGCCGCTCTCCTGTCGCGC 4477 Query 11680 ACA-------GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 || |||||||||||||| ||||| | ||| || || ||| |||| | | Sbjct 4478 ACGTCCAATTGCGTCAATCTCATCAATGAAGATGATGCAAGGGGCGTTCTTACGTCCTTC 4537 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG- 11791 |||| | || | ||||| | || ||||| |||||||| |||||||| | | Sbjct 4538 GGCGAACAAATCTCTCACACGTGAAGGACCGACACCGACGAACATTTCAACGAACTCAGA 4597 Query 11792 -CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | || | ||||||| ||| || || |||||| || || |||| || || | Sbjct 4598 ACCGCTCA-CACTGAA-GAATGGTACTCCAGACTCGCCGGCTGTGGCCTTGGCAAGTAAT 4655 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---A 11907 ||||| || ||||| || | ||||| | | || || ||||||||||||||||| Sbjct 4656 GTCTTGCCAGTACCCGGGGGGCCAGCTAAGATAGCACCTCGGGGGATCTTGGCACCGAGC 4715 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || | || | ||| |||| ||| |||||| ||||| |||| Sbjct 4716 TTTTCGAACT---TCTCGGGCTGCTTCAGGAAGCTCACAAACTCC 4757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588954215250200