Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2917 230 4e-55 seq362 161 2e-34 >seq2917 Length=53793 Score = 230 bits (254), Expect = 4e-55 Identities = 808/1235 (65%), Gaps = 69/1235 (6%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||| |||||||| || ||||||||||| ||| ||| ||||| ||| | |||||||| Sbjct 47467 GTCAGCGCAGCGTGATAAATGGTCTCAAAAATCTGCTTATTGAG-CTCACGAGCCTCGGG 47409 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||| ||||| | | ||||| | ||||| || ||||| || || | | Sbjct 47408 GGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGACCCTGAACACCAAGA 47351 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 47350 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 47293 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | | || | | |||| | |||||||| | Sbjct 47292 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGA 47233 Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | | | ||| ||| | ||| || || | ||| |||||| Sbjct 47232 AGTCGTAG--CAA---GCCTCATCGTAGTTGATG----------AAGG----AGGGCAGA 47192 Query 221710 GCT-----GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 | | ||| ||||| || ||||| |||||||| | |||| || || || Sbjct 47191 GATAGAGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCA 47132 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || || ||| || |||||| || |||| || || ||| |||||| ||| Sbjct 47131 GTGCAAAGATTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAG 47072 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 || || ||||||||||| || || || ||||| ||| ||| | ||||| || | Sbjct 47071 GCATCTTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTAC 47012 Query 221885 CAGAGTTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATA 221937 || || | |||| || | | |||| | |||| | || |||| |||||| || Sbjct 47011 CAAAGCT-TCTGAGCCTTGATCGTCTTGCGACCCTTGCCCGCCTTCTCGTACTTTTCGTA 46953 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 | ||||| | | |||| || ||||| ||| | ||||| || ||| Sbjct 46952 C-------AGAGCCT--CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCATT 46902 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| ||||| || |||||| ||| | || || | || ||| || || || ||||| Sbjct 46901 GGGGCACATAAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGAT 46842 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| || || | || || || | || || ||||||| |||| ||| || | || Sbjct 46841 CCAAAGGGCAAGGAAAAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAG 46782 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||| | ||||| || | |||| |||||| ||||| || |||| ||| | ||| ||||| Sbjct 46781 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 46722 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCG 222236 |||||||||||||||||| || | ||| | ||| | |||||||| ||||| | | Sbjct 46721 TCGCTTGTTGCCACCCTGGTCGA-CATACCGAGCAGTGTTGTTGAAGACACGAAGCATAG 46663 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 | || | ||||| ||| ||||||||| || ||||| | || || | || Sbjct 46662 GAACGACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCAC---GGA 46606 Query 222297 TACTG-GCAGA--CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| | ||| | || || |||||||| || || ||||||||||| ||| |||||| Sbjct 46605 TACGGTGCACATTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 46546 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 |||| || ||| ||||| ||| ||| ||||| | | | || || ||||| |||| Sbjct 46545 GAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACA 46486 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 || | | | || | ||| || || |||||||| || || || ||| | | Sbjct 46485 ATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGC 46426 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGA-ATCTGCAT 222531 | |||||||| | ||| ||||| | ||||| |||| | || ||| || | | || Sbjct 46425 TTGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACA- 46367 Query 222532 GGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGC 222589 | | || | |||| ||||| ||| || | ||| ||| || | | || ||| Sbjct 46366 GACACA-CGCATGATCATGTGCTGTGGGCGCTCGACAATCTTACCGTCAATCT--TGAGG 46310 Query 222590 AGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||||| ||| |||| ||||||||| |||||||| Sbjct 46309 AGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 46275 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | ||||| | || || ||| | || Sbjct 47759 GTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGG 47700 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | || ||||| || ||||| || || | Sbjct 47699 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 47640 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295 || ||||||||||| | ||| | | |||| || || || || | |||||| || Sbjct 47639 GAGTAGACTGTTGCGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 47580 Query 221296 G 221296 | Sbjct 47579 G 47579 >seq362 Length=14512 Score = 161 bits (178), Expect = 2e-34 Identities = 380/571 (67%), Gaps = 11/571 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| || || |||||||| || Sbjct 11364 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 11423 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | ||||| | ||| |||| || || || | || |||||| || || Sbjct 11424 TCTAAGGATCTCCACGACTGGAACAACCGC-CTGACTGCCGATGAGCAGTTCTTCGTCTC 11482 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||||||||| || |||||||| || |||| | Sbjct 11483 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 11542 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | || || ||| | ||||| ||||||||||| |||||||| || Sbjct 11543 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGAT 11602 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || || || || || || || || | || Sbjct 11603 GGAGAACATTCACTCCGAGACCTACTCC---CTCCTCATCGACACCTATATCAAGGAGCC 11659 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 11660 CGCCCAGCGAACCTACCTTTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGC 11719 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | || | || | |||| | | || || || || Sbjct 11720 TGACTGGGCCATCCGATGGATCCAAGATAAGGACTCTTCCTTTGCCCAACGCCTCGTTGC 11779 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || ||||| || ||||| ||||| ||||| ||| | || || |||| ||||||||||| Sbjct 11780 TTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATTTTCTGGCTCAA 11839 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || ||| ||| || |||||||||||| | |||||||| Sbjct 11840 GAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGG 11899 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| |||| || ||||||||||| ||| || Sbjct 11900 TCTTCACACTGACTTTGCCTGCCTCCTCCAC 11930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928810444352960