Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq338 114 8e-20 >seq338 Length=10966 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || | || || || | ||||| Sbjct 7108 ACGAAGACGGAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 7049 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||||||||| |||||||| || || || |||||||| |||||||| || Sbjct 7048 TCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGGAGGAATACC 6989 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| ||||| | || | | ||| | Sbjct 6988 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 6930 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| ||||| ||||| Sbjct 6929 GAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTG 6890 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || | || || || || || || Sbjct 6880 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGGGT 6821 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| |||||||||||||||||||| ||||| || || |||||||| || || Sbjct 6820 TCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGGATACC 6761 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| || ||||| Sbjct 6760 CTCCTTGTCCTGGATCTT 6743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268052274132932