Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2755 123 3e-22 seq2917 118 1e-20 seq362 114 2e-19 >seq2755 Length=63060 Score = 123 bits (136), Expect = 3e-22 Identities = 94/111 (85%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||||||||||||||| || || | || ||||| |||| |||||||||| Sbjct 22989 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTCGGTTGCAAAACTGTTGCCAACATGA 23048 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| ||||||||||| || || ||||| | | ||| Sbjct 23049 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATTACGAACG 23099 >seq2917 Length=53793 Score = 118 bits (130), Expect = 1e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || || || |||| ||| ||||| || ||||| || |||| ||||| || Sbjct 46706 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACGACACCGTTCGA 46647 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 46646 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAGACC 46587 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| ||||||||| | || || ||||| || |||||||| ||||| Sbjct 46586 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 46527 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || |||| ||||||| || || | ||||| || || ||| || || | ||||| Sbjct 46526 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 46467 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||| |||||||||||||| Sbjct 46466 GGCATTGAAGAGCGTGGG 46449 >seq362 Length=14512 Score = 114 bits (126), Expect = 2e-19 Identities = 201/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | ||||| |||| || || |||||||| || ||||| Sbjct 11900 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGACCACGCTT 11841 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| || |||| | ||| || ||| ||||| ||||| ||||| || || Sbjct 11840 CTTGAGCCAGAAAATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCGAA 11781 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCC 869357 | | ||| || | ||||||| | ||| || | |||| |||||| || |||| Sbjct 11780 AGCAACGAGGCGTTGGGCAAAG--GAAGAGTCCTTATCTTG--GATCCATCGGATGGCCC 11725 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTT 869416 |||| ||||| || | | | || | || || |||||| || |||| ||| | Sbjct 11724 AGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAAAGGTAGGTTC-GC 11666 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||||| |||||||||||| ||||| || |||||||| Sbjct 11665 TGGGCGGGCTCCTTGATATAGGTGTCGATGAGGAGGGAGTAGGTCTC 11619 Score = 95.1 bits (104), Expect = 1e-13 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | || ||||| Sbjct 12214 GCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 12155 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 ||||| | ||| ||||||| | ||||||| ||| ||| || ||||||| Sbjct 12154 TTTTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACA 12095 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || || ||||| ||||| |||||||| ||||||| | | ||||||||||| Sbjct 12094 --AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGA 12037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106896370603003