Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq362 178 2e-38 seq2917 105 1e-16 >seq362 Length=14512 Score = 178 bits (196), Expect = 2e-38 Identities = 354/511 (69%), Gaps = 20/511 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | |||| Sbjct 11363 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACC 11421 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || || |||| ||||| ||| ||| | ||| |||| ||| Sbjct 11422 TCTCTAAGGATCTCCACG----ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTC 11477 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| || ||| ||||| ||| ||||| || || ||||||||| | Sbjct 11478 GTCTCTCACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGT 11536 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 11537 CGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGAT 11596 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||| ||||| || |||||||| ||||| ||||||||||| ||||||| Sbjct 11597 CATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTATATCAAGGA 11656 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | | || | ||| |||| || |||||| || || | || | | | || | Sbjct 11657 GCCCGCCCAG-CGAACCTACCTTTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGA 11715 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAG-GAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||| |||||||| || |||||| |||| | || ||| | ||||||| | || | Sbjct 11716 AGGCTGACTGGGCCATCCGATGGATC--CAAGATAAGGACTCTTC-CTTTGCCCAACGCC 11772 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 |||| | || || | ||| ||||| ||||| ||| || ||| | |||| || | Sbjct 11773 TCGTTGCTTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATTTTCT 11832 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| || |||||||| ||||| Sbjct 11833 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCT 11863 >seq2917 Length=53793 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| ||||||||||| || | || || || || ||||| || | || Sbjct 46449 CCCACGCTCTTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 46508 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 46509 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 46568 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | | ||| | || || | ||| | ||| | Sbjct 46569 AAGATGGCTGGTGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACTGGCTCATACATC 46628 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || ||||| | || || |||||||| || || ||| |||| Sbjct 46629 GCCGGTACCAACGGTACATCGAACGGTGTCGTTCCTATGCTTCGTGTCTTCAACAACACT 46688 Query 260165 GCGCGCTACGTCGACCAG 260182 || || || ||||||||| Sbjct 46689 GCTCGGTATGTCGACCAG 46706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177525799011358