Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2917 206 3e-48 seq362 113 6e-20 seq487 87.8 2e-12 >seq2917 Length=53793 Score = 206 bits (228), Expect = 3e-48 Identities = 1141/1792 (64%), Gaps = 59/1792 (3%) Strand=Plus/Minus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| || ||| Sbjct 48103 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 48044 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | ||||| | || |||| |||||| || Sbjct 48043 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTC 47985 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 47984 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 47927 Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557 || | | ||| || || | || |||||||| || ||| ||| ||||| | Sbjct 47926 ATCTGGACGAC---CTGGCGCTGAGAGATCTCCCAAACAGTCTTATACAGAGCCTTGACA 47870 Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617 || | ||||| | | || ||||| ||||| || | | | ||| | | |||| Sbjct 47869 TCGGCAGGGATGTTGGGAATGTTCTGAATGGATCCATTCTCAGCAATGATGCGGTTCTTC 47810 Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677 ||| | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 47809 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 47750 Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | | ||||||| || | ||||| || || ||||| Sbjct 47749 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 47690 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 47689 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGTAGACTG 47630 Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 110852 || || | || | ||||| ||||| ||| | |||||||| || | | Sbjct 47629 TTGCGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 47573 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | || || || |||| ||||||| ||||| || | || | || ||||| ||||||| Sbjct 47572 GAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGAATACCCTCAGAGGCGGGGGAACCCT 47515 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 110971 ||||| |||| ||| | | | ||||| | ||| | || ||| | ||| Sbjct 47514 TGAAGGTGGAGTAGGGACCCTCTTCCTTAGCCAGCTGCACGGAG-GCAGTCAGCGCAGCG 47456 Query 110972 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 111031 ||||| ||||| ||||| || | ||| | ||| || || || || || | Sbjct 47455 TGATAAATGGTCTCAAAAATCTGCTTATTGAGCTCACGAGCCTCGGGGGACTCGAAGGGC 47396 Query 111032 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 ||| || | || || |||| || ||||| |||||||| | |||||| |||| ||| Sbjct 47395 ATGCG-CAGAGCAAGGAAAGCATCGGCAAGACCCTGAACACCAAGACCAATGGGTCGGTG 47337 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 111150 ||||| ||| || || || || || || || || || |||| ||| Sbjct 47336 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 47277 Query 111151 TAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT 111210 || || |||||| || ||| | || || || | | || | || || Sbjct 47276 CAGGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAGC 47220 Query 111211 CTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 111267 ||| || | ||| | || || | | || || | ||||| || || ||| Sbjct 47219 CTCATCGTAGTTGATGAAGGAGGGCAGAGATAGAGAGGCAAGGTTGCAGACGGCGACCTC 47160 Query 111268 ATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327 || | |||||| | |||||| || || | ||||| || || || || | Sbjct 47159 GTCAGGGGCACAGTACTCGATAATTTCAGTGCAAAGATTGGAGCTTCGGATGGTACCGAG 47100 Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387 ||||||||||||||||| |||||| ||||| |||||||||||| | || | || || Sbjct 47099 GTTCTTTTGGTTACTCTTGCGGTTGCAGGCATCTTTGTAGAGCATGAATGGGTTTCCGGT 47040 Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG- 111445 ||| ||||| | | ||||| || | ||||| | || | | || | || | ||| Sbjct 47039 CTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG----ATCGTCTTGC 46984 Query 111446 GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 111503 | || | ||| || |||||||||| ||| || || || |||||||| || || Sbjct 46983 GACCCTTGCCCGCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGT 46924 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 ||| ||| || || || | || || | ||| | ||| | ||| | ||||| | Sbjct 46923 CGGCGAGGCCAGGGCACTCATTGGGGCACATAAGTGTCCAGTCACCGTTCTTTTCAACAC 46864 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTC 111621 ||||||| ||||| || || ||||| |||| | | ||| || || | ||| || |||| Sbjct 46863 GCTTCATAAAAAGATCAGGGATCCAAAGGGCAAGGAAA-AGGTCACGGGCACGGA-CCTC 46806 Query 111622 TTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 111681 || | ||| ||||| || | ||||||||||| | || ||| | |||||| ||||| Sbjct 46805 CTCCTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTC 46746 Query 111682 AAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGT 111738 || |||| || | || || ||| ||| | || | ||||| || || || Sbjct 46745 GAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGT 46686 Query 111739 GGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA- 111796 | ||| || || |||||||| |||| | ||| | ||| ||| || || || ||| Sbjct 46685 GTTGTTGAAGACACGAAGCATAGGAACGACACCGTTCGATGTACCGTTGGTACCGGCGAT 46626 Query 111797 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 111856 || ||| | | || | | | || | | || |||||||| |||||| ||| Sbjct 46625 GTATGAG--CCAGTAGCACGGATACGGTGCACATTCAGACCAATACCACCAGCCATCTTG 46568 Query 111857 GAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTG 111916 ||||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 46567 GAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATA 46508 Query 111917 GCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGT 111976 | | | ||||||| |||| || || || || || ||||||||||| || || Sbjct 46507 TCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGG 46448 Query 111977 G----TTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032 | |||||||| |||| | | | |||||| || ||||||||||||||| || Sbjct 46447 GAAGCATGCGTGAA-GAACTTGCTT---GACATCAGGTTGTATGTCTCCAAGACTCGCTC 46392 Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || ||| || | | || ||||||| ||||| ||||||| Sbjct 46391 GATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGTGGG 46340 >seq362 Length=14512 Score = 113 bits (124), Expect = 6e-20 Identities = 301/457 (66%), Gaps = 16/457 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| || ||||| ||||||||||| Sbjct 12205 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTTTCCATG 12146 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 12145 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 12091 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 12090 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 12031 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || |||| | | ||||| || || || | | ||| Sbjct 12030 CACAGGGAAGAGCCTCAGTGAGGAACTCCTGTTCAATGGTGACGGCATCAGTGATGATAT 11971 Query 122606 CGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | || || | | | ||| | | || | || | || ||| || ||||| Sbjct 11970 CTTGAATCATCTGCTTGCTGGCACGGCCCTTTAGGTGAGAGTGGAGGAGG--CA-GGCAA 11914 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| |||||||| || || || || || || || |||||| ||||| |||| Sbjct 11913 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCA 11854 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| |||| | | ||| | || |||||||||||||| Sbjct 11853 TGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 11794 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 | || || || |||| ||||||| ||| ||||| Sbjct 11793 CAACGGCAGCGAAAGCAACGAGGCGTTGGGCAAAGGA 11757 >seq487 Length=35546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 4719 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 4660 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| | ||||| ||| | |||||||| || || Sbjct 4659 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 4600 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 4599 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 4547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008770666400