Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1446 159 1e-33 seq338 154 4e-32 seq995 113 1e-19 seq1472 105 2e-17 >seq1446 Length=10063 Score = 159 bits (176), Expect = 1e-33 Identities = 438/666 (66%), Gaps = 9/666 (1%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 7771 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 7712 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| ||| || || | || || Sbjct 7711 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCCCAGAACACT 7652 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || |||||| | || ||| | | || | ||| || | ||| Sbjct 7651 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAT 7592 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | | || | | ||| |||| ||| || | || ||||| Sbjct 7591 ATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCAACATCGAGGTC 7535 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTA 349558 || | || || || || || || ||| |||| || || || || | ||| | | Sbjct 7534 GAGTTCAAGGGCGAGACCAAGAC---TTTCACCCCCGAGGAGATCTCTGCTATGATCCTC 7478 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | ||||| | || | || || || || | | || ||| || Sbjct 7477 ACCAAGATGCGTGAGACCGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTTGTT 7418 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || ||| | |||||| || || || |||||||| ||| Sbjct 7417 ACTGTCCCTGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCTCATC 7358 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| |||| || || || || |||||||| || ||||| || || Sbjct 7357 GCCGGTCTCAACGTTCTCCGAATTATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 7298 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | ||| || || | || || || ||| | ||||||||||| Sbjct 7297 CTTGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGATCTTGGTGGTGGTACC 7238 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | ||||| ||| Sbjct 7237 TTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGT 7178 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || ||||| || || || || || ||| Sbjct 7177 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAATGAA 7118 Query 349919 TTTAAG 349924 || ||| Sbjct 7117 TTCAAG 7112 >seq338 Length=10966 Score = 154 bits (170), Expect = 4e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || |||||||| || || || || || || || Sbjct 7117 CATACCACCACGAAGACGGAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 7058 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||||||||| || || || ||||| || Sbjct 7057 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCCGG 6998 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| | Sbjct 6997 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 6939 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 6938 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 6887 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| || | Sbjct 6611 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 6552 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 6551 AATCAGAGAGAGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 6492 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || || || | || || | Sbjct 6491 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAG 6432 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| || || || || || |||||||| Sbjct 6431 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 6377 Score = 131 bits (144), Expect = 5e-25 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 140498 AATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAAT 140557 |||| |||| ||||| || | || ||||| || || ||||| ||||| || || || Sbjct 7354 AATAGCTTACTGGCCACCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGAT 7295 Query 140558 ATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTG 140617 || || || || || || |||||||| | || || ||||| ||||| ||||| || Sbjct 7294 GTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTG 7235 Query 140618 CTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAAT 140676 ||||||||| || || || || ||||||||||| || ||| || || || || || | | Sbjct 7234 CTGATCAGGGGGGATACCCTCCTTATCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGT 7176 Query 140677 CAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || | ||||| ||||| || | |||||||| || || || || || |||||||||| Sbjct 7175 CACTAGACTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAAATCTGCA 7116 Query 140737 T 140737 | Sbjct 7115 T 7115 Score = 127 bits (140), Expect = 6e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| ||||| || || || || || | Sbjct 6893 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGGATGTTGT 6834 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 6833 AGTCGGCAAGGGTTCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAGACGCTGCTGGT 6774 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || ||||| || || | || ||||| || || | ||| || | Sbjct 6773 CAGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTATCGGACG 6714 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || || | ||||| || || || || || || Sbjct 6713 ACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 6671 >seq995 Length=28228 Score = 113 bits (124), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 |||||||||||| | ||||| ||| || || | |||||||| || ||||| || || Sbjct 1118 CGTGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTC 1062 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 1061 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 1002 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 1001 CCAGGGTTGACAA 989 Score = 107 bits (118), Expect = 6e-18 Identities = 190/276 (69%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||||||||| |||| ||| || || || Sbjct 357 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACGGC 298 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||| ||||| | ||| | |||||| |||| || |||||||| || || | ||||| || Sbjct 297 AGTGTCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTGGGAGTGAG 238 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | ||| || | || | || || | ||| | || || Sbjct 237 ACCACGGAGGTAAGAGTTCTCGACAAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 178 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||||||||| |||| || || || | ||||| || || || |||||| | || Sbjct 177 GAAGTGAGGTAATGTGCGATACTTGAAACCGAAAGGAATACGCTTGCCTTCAACAATTTG 118 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| |||||||| |||||| Sbjct 117 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 85 >seq1472 Length=76129 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 47697 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 47756 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| ||||| Sbjct 47757 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGG 47816 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 47817 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 47876 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 47877 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 47927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515196953391077