Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2917 224 1e-53 seq2326 141 1e-28 >seq2917 Length=53793 Score = 224 bits (248), Expect = 1e-53 Identities = 514/764 (67%), Gaps = 26/764 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || | | |||||| ||||| || | ||| ||| ||||| ||| Sbjct 46354 TCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 46413 Query 53253 ACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 || | ||| ||| |||| ||| ||||| || | || || || ||||| || || || Sbjct 46414 ACCTGATGT--CAAGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTTCAATGCCGGCAC 46471 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 ||| || || |||| |||||| |||| | |||||||| ||| || || || Sbjct 46472 CCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGACAGTATTGAGGG 46531 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| || |||||| |||||| ||||||||| | | |||||||| ||| | Sbjct 46532 AATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCT 46591 Query 53431 CCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCG 53486 | ||| | | | ||||||| | ||| || ||| || || ||||| | ||| Sbjct 46592 GAATGTGCACCGTA--TCCGTGCTACTGGCTCATACATCGCCGGTACCAACGGTACATCG 46649 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 | || |||| |||||||| || |||||||||||||| || ||||| ||| |||||| Sbjct 46650 A--ACGGTGTCGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGGTATGTCGACCAGG 46707 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| ||||| || | || ||||||||||||||||| |||||| | || | Sbjct 46708 GTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGTCT 46767 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGT 53666 | ||||| || || || ||| ||| || ||| | || ||| | || ||||||||| | Sbjct 46768 TCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGACCTTT 46827 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 | || || ||||| || || || || ||| | || || ||| ||| || ||| Sbjct 46828 TCCTTGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTGACTGGA 46887 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAAC 53785 || |||||||| || |||||||| |||||| | | || |||||| |||||||| | Sbjct 46888 CACTTATGTGCCCCAATGAGTGCCCTGGCCTCGCCGACTG-CTACGGAGAGGAGTTCGAG 46946 Query 53786 GAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 | |||| | |||| || | |||| ||| |||| | ||||||| Sbjct 46947 GCTCTGTACGAAAAGTACGAGAAGGCGGGCAAGGGTCGC------AAGACGATCAAGGCT 47000 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| | || || || || |||| ||||| |||| || | |||| | Sbjct 47001 CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATTCATGCTC 47060 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||| ||| | |||| ||||| ||||| |||||| |||| Sbjct 47061 TACAAAGATGCCTGCAACCGCAAGAGTAACCAAAAGAACCTCGG 47104 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| || | || Sbjct 47930 TGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCC 47989 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | | ||||||||| || |||||| || |||||||| || Sbjct 47990 CACGATGGGCAAGATCACCAGCATGCACTTTGCAGGCTGGAAGCTTGGCCTCAAGACTGG 48049 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 48050 CATGTACTACCTTCGTAC 48067 >seq2326 Length=35264 Score = 141 bits (156), Expect = 1e-28 Identities = 210/296 (71%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || |||||||| ||||||||| || |||||||| ||||||||||| || | |||| Sbjct 5583 AGCCGAGTGAAGGTGTAACGAGGACTGGCAGCATCAGATCCACCAGCAAGTCGAGAACCG 5642 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | |||||| || |||| || | |||||| | || |||||||| || |||| | Sbjct 5643 AAGTTTCCACTGGGTTCCAGACAATTGATGTTGTTTGAACCAACAAAGTTCTGGGCCAGG 5702 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | || || |||||| | ||||| ||||| || || |||||||| | || Sbjct 5703 CCAATGATAGTCTGTTGGAGAGACTGTTCACCGTGGTGGTAGGCAGTCTGCTCAGAGACA 5762 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| | | | |||||| |||| ||||| | ||| |||||| |||||||| Sbjct 5763 TAACCAGCCAATTCAACGACCTTCTTGTCTTTGACG--ATGTTTCTCTTGAAGCAGGCAT 5820 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGC 117592 | || ||||| ||||||| ||||| | |||||| ||| ||||| || ||| Sbjct 5821 ATATGACCTTACGCTGACCGGGCTTGAAGCCATCCAGCACCGAGGGGATGGATCGC 5876 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| |||| || | ||||| ||||| ||||| || || || | || || Sbjct 5586 CGAGTGAAGGTGTAACGAGGACTGGCAGCATCAGATCCACCAGCAAGTCGAGAACCGAAG 5645 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||| || || |||| |||||| | || || || ||||| |||| Sbjct 5646 TTTCCACTGGGTTCCAGACAATTGATGTTGTTTGAACCAACAAAGTTCTGGGCCAGGCCA 5705 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || || ||| | |||||||||||| || || |||||||| | || || Sbjct 5706 ATGATAGTCTGTTGGAGAGACTGTTCACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAA 5765 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||| |||| | | ||| |||||| ||||| || || Sbjct 5766 CCAGCCAATTCAACGACCTTCTTGTCTTTGACGATGTTTCTCTTGAAGCAGGCATATATG 5825 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||||| ||||| || || || || |||| ||| Sbjct 5826 ACCTTACGCTGACCGGGCTTGAAGCCATCCAGCAC 5860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195759848200