Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F001023065.1_202015-06-09] 2,959 sequences; 43,499,819 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq338 104 2e-17 seq1472 95.1 8e-15 >seq338 Length=10966 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| ||||| || | Sbjct 6377 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 6436 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| ||||| || || | || || || || Sbjct 6437 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 6496 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || |||||||| || || || |||| ||||||| | ||||||||| Sbjct 6497 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGACGCACTCTCTCTGATTACAAC 6556 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| | ||| | ||| Sbjct 6557 ATTCAGAAGGAGTCCACTCTTCATCTTGTT 6586 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || |||||||| || ||||| || | Sbjct 7115 ATGCAGATTTTCGTGAAGACTCTGACTGGAAAGACCATCACTCTTGAGGTTGAGTCTAGT 7174 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| || || || ||| | || || ||||| Sbjct 7175 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 7234 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||||| | ||||| || |||| |||||| Sbjct 7235 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 7294 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 7295 ATCCAGAAGGAGTCAAC 7311 Score = 89.7 bits (98), Expect = 3e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| || |||||||| || || || ||||||||||| || || || | || || | | Sbjct 6669 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGATACCATCG 6728 Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 | ||| |||| | || | | ||||| || ||| | || || || || |||||| | Sbjct 6729 ACAATGTTAAGTCGAAGA-TCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTG 6787 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || ||||| || || ||||||||||||| || || | | ||| |||||||| || || Sbjct 6788 ATTTTTGCTGGAAAGCAACTGGAAGACGGCCGAACCCTTGCCGACTACAACATCCAGAAG 6847 Query 23800 GAGTCCAC 23807 || || || Sbjct 6848 GAATCTAC 6855 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || || ||||| ||||| || || | Sbjct 6887 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 6946 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || ||| | || || ||||| Sbjct 6947 GATACCATTGATAATGTGAAGAGCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 7005 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| ||||| || || | || ||| | ||| ||||| Sbjct 7006 ACAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAA 7065 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 7066 CATCCAGAAGGAATCTAC 7083 >seq1472 Length=76129 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||||||||| || |||||||| || || || || || Sbjct 47930 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 47871 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 47870 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 47811 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || || || || | ||||| | |||| ||| Sbjct 47810 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 47751 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 47750 AACATCCAGAAGGAGTCCAC 47731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997410423172