Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F002196585.1_202017-06-16] 1,359 sequences; 49,118,876 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq438 167 4e-36 seq472 159 6e-34 seq560 147 4e-30 seq948 118 2e-21 seq494 107 4e-18 >seq438 Length=841462 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||| Sbjct 493782 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 493723 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 493722 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 493663 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 493662 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 493603 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 493602 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 493556 >seq472 Length=3275154 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || || ||||| ||||| ||| Sbjct 2258662 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 2258603 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | ||| ||||| || ||| Sbjct 2258602 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGA 2258543 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||| ||||| | || || || Sbjct 2258542 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 2258483 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || || | |||||||||||| |||||||| ||| Sbjct 2258482 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 2258432 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || || || || || ||||| || ||||| Sbjct 2259172 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 2259113 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || |||| ||||| ||||| ||| Sbjct 2259112 AGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGA 2259053 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||| || || ||||| || | ||| || ||| Sbjct 2259052 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 2258993 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||||| ||||| ||||||||||||||||| || ||||| Sbjct 2258992 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 2258946 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || || || || || || ||||| || |||| Sbjct 2258944 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 2258885 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| || || || || || | || ||||| || || Sbjct 2258884 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 2258825 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||||| ||| || |||||||| || | || || || Sbjct 2258824 ATACCCTCCTTATCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 2258765 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 || | |||||||| || || |||||||||||||||| ||| Sbjct 2258764 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 2258724 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||| |||||| | |||| ||| |||||| || | | | Sbjct 1156717 TAACGCCACTGAAGGTACTGGTTAGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCTAGA 1156776 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | || | || || | |||||| |||||| || || || Sbjct 1156777 GCGTGCTGCTTGATATAACCAATACGAAGGTTGGGGTGCTTCTCAACCTTTCCGGTGGTA 1156836 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | ||||||||| |||| |||||| || || | |||||| ||||| ||||||||| Sbjct 1156837 GGGATAGTCTCGCCGGTAAGGAGCTTGATAAGAGTCGACTTGCCAGCACCGTTGGGGCCA 1156896 Query 225158 AT 225159 || Sbjct 1156897 AT 1156898 Score = 84.2 bits (92), Expect = 4e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502 ||| ||||| || |||||||| || ||||||| ||| | | || | | |||| Sbjct 1157187 GTCCAGGAATCCGGAGTCGTGAGAAACAATGA--GACTGGTGATGTCGGGATGAGACTTG 1157244 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | |||||| || | |||| || || | ||||| ||||||||||||||| Sbjct 1157245 AGGTAGTTCTCGAGCCAAGCGATGTTGGCAACATCAAGATGGTTAGTAGGTTCGTCCAGA 1157304 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || || | ||||||| ||| || || || | |||| ||||||||| ||||| || Sbjct 1157305 AGGAGAACGTCAGCACGCTGGAGCATAGCTCGGGCCAGAGCCAGCTTCATCTTCCAACCT 1157364 Query 225623 CCGGACAGGGAGCC 225636 || || ||||| || Sbjct 1157365 CCAGAAAGGGAACC 1157378 >seq560 Length=559045 Score = 147 bits (162), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 445870 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 445811 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 445810 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 445751 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 445750 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 445692 >seq948 Length=183984 Score = 118 bits (130), Expect = 2e-21 Identities = 559/876 (64%), Gaps = 39/876 (4%) Strand=Plus/Plus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| || ||||||||||| || | || || |||||||||||||| |||||| |||| Sbjct 69950 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 70009 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC--GCCAAACTGCTTGGGGTAACCG 10055 ||| ||| |||||||||||| |||||||| ||| |||| ||| || || Sbjct 70010 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAAC--CTTCTCGTTGCCA 70067 Query 10056 AGTGCTGTGAAAATG---CGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || || | || ||||| |||||||| |||||||| |||| ||||| ||| Sbjct 70068 AGCGC---GACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAG 70124 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | | | |||||| | || || | ||| |||| || ||| ||| Sbjct 70125 TTCATGCCGAGAAGGGCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACG 70184 Query 10173 GCTTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGA 10228 || || | ||| || | || | | || || | || ||| | || Sbjct 70185 GCATCAGTAATGATATCCTGGATCATCTGCTTGCTGGCACGAC----CCTTGAGGTGAGA 70240 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | ||||| |||| | ||| || ||||| || || ||||| ||||||||| Sbjct 70241 GTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGA 70300 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||||||||||||||| || || || |||||||| || | | ||| | || Sbjct 70301 GAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACC 70360 Query 10349 GGAGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGT 10407 ||| | | |||||| || ||| | | || ||||| |||| || |||||| || Sbjct 70361 ACTGAAGAAGATACCCTCAACAGCA-GCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGT 70419 Query 10408 CGCGCGAAAAGTAT--TTCG--AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTC 10463 | | | || ||| |||||| | |||||||||| | | ||||| ||| Sbjct 70420 C-CTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTC 70478 Query 10464 TCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGC 10523 || || || | ||||| | | | |||| || |||| || | |||| |||| Sbjct 70479 TCAATGGCGTTAAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGC 70538 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGT 10583 |||||||| |||| ||||| | |||| | |||| | ||||||| ||| Sbjct 70539 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGA 70598 Query 10584 GCCGAGGGGTCCGTGACTTCCTCGGCA---AAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 ||| |||| | || ||||| || || | | |||||||| | || || Sbjct 70599 GCCTCGGGGATCTGGA---CCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATA 70655 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 ||||| | || ||||| | |||||||| || |||| ||||||| | || Sbjct 70656 CCATCAGACGCAGCGAAGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTC 70715 Query 10701 A----GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 | ||| || |||||| | ||||| | || | | |||||| | ||||| Sbjct 70716 AGGCGGTTGTT----CCAGTCATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 70771 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAAT 10792 ||| | || | |||||||||||||| || |||| Sbjct 70772 GAAGGAAGCCTCAGCCTTCTTGTACATTTGCCAAAT 70807 >seq494 Length=673975 Score = 107 bits (118), Expect = 4e-18 Identities = 439/677 (65%), Gaps = 39/677 (6%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| || ||||| || || || |||||| Sbjct 318676 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 318735 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| |||| || Sbjct 318736 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGAGTGGGG 318795 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || ||||| || ||||| || |||| |||||| ||||| ||||| || || Sbjct 318796 ATGAG-CTCACCAGTGAGCACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 318854 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214 ||| |||| ||||| || | ||| || | || || |||| | | | Sbjct 318855 GACGGCAATACGGGAGCCCAGAGAGCACTGGAAGGAGATGTCCTGGATCTGAGGCTTGGA 318914 Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267 || |||| |||| |||| || | |||| || ||||| | | Sbjct 318915 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATGGCCTTGGC 318965 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||| ||||| ||| || | | || Sbjct 318966 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAAGTGAACTCCATCTCGGACTC 319025 Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 || ||||||||||| |||| |||| || || ||||| |||| |||||| Sbjct 319026 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 319082 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443 || || | ||||||||| | |||||| || || || ||| | ||| || Sbjct 319083 ACCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACGATGTGCTG-GCAGACGT 319138 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502 ||| ||||||||||||||||| || || |||||||| | || | | | | || Sbjct 319139 TGTCGAGGAAGCCAGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GGGA-GTTGATG 319194 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | |||||| ||||| | || |||| ||||| ||||| ||||| ||| Sbjct 319195 AGGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGA 319254 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||| || || | | | || || ||| || |||| |||||||| ||||| || Sbjct 319255 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCA 319314 Query 225623 CCGGACAGGGAGCCGAT 225639 || || |||| || ||| Sbjct 319315 CCAGAAAGGGCGCTGAT 319331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921606743939480