Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F002196585.1_202017-06-16] 1,359 sequences; 49,118,876 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq438 98.7 1e-15 seq560 96.9 4e-15 seq472 84.2 2e-11 >seq438 Length=841462 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || | || || |||||||| ||||| || Sbjct 493747 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 493688 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 493687 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 493629 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 493628 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 493569 Query 42196 CAAAGATTTGCATTTT 42211 | || || ||||| || Sbjct 493568 CGAAAATCTGCATCTT 493553 >seq560 Length=559045 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||||| || | || || ||||||||||||||||| | Sbjct 445872 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 445813 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | |||||||| ||||| | || | || |||||||||| ||| || |||| | Sbjct 445812 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 445753 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 445752 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 445693 Query 42199 A 42199 | Sbjct 445692 A 445692 >seq472 Length=3275154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || || || || || |||| || || ||||| ||||| || Sbjct 2258908 TCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAG 2258849 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | | |||||| ||| ||| | |||| | | | | Sbjct 2258848 ATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC-TGAATCTTTGACTTAACATT 2258790 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || ||| ||| || || || | |||||||| ||||| || || ||||| || Sbjct 2258789 GTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 2258730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || | ||||| || | || || || ||||| |||||||| Sbjct 2259136 TCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAG 2259077 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||||||| || |||| || | | |||||||||| ||| || || | | Sbjct 2259076 ATAAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTA 2259017 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || ||| || || || || | || ||||| || || || || ||||| || Sbjct 2259016 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACG 2258957 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 2258956 AAGATTTGCAT 2258946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || | || || | ||||||||||||||| Sbjct 2259365 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAA 2259306 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || |||||||| || | || | | |||||||||| ||| | || | | ||| Sbjct 2259305 GATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGT 2259247 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || || | |||||||| || || || || ||||| | Sbjct 2259246 TGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCA 2259187 Query 42196 CAAAGATTTGCAT 42208 |||| || ||||| Sbjct 2259186 CAAAAATCTGCAT 2259174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543203572172560